Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X0N entry

There are 6 chains in PDB entry 5X0N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 92	TYR 288
B	GLY 91	TYR 288
C	SER 90	ILE 290
D	SER 90	TYR 288
E	SER 90	ILE 290
F	GLY 91	TYR 288

There are 44 helices in PDB entry 5X0N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	103	Right-handed 310
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	167	172	Right-handed alpha
Helix 4	AA4	A	179	186	Right-handed 310
Helix 5	AA5	A	220	228	Right-handed alpha
Helix 6	AA6	A	241	246	Right-handed alpha
Helix 7	AA7	A	276	288	Right-handed alpha
Helix 8	AA8	B	105	117	Right-handed alpha
Helix 9	AA9	B	134	138	Right-handed 310
Helix 10	AB1	B	167	172	Right-handed alpha
Helix 11	AB2	B	179	184	Right-handed 310
Helix 12	AB3	B	221	229	Right-handed alpha
Helix 13	AB4	B	241	248	Right-handed alpha
Helix 14	AB5	B	275	287	Right-handed alpha
Helix 15	AB6	C	105	117	Right-handed alpha
Helix 16	AB7	C	134	138	Right-handed 310
Helix 17	AB8	C	167	172	Right-handed alpha
Helix 18	AB9	C	181	186	Right-handed 310
Helix 19	AC1	C	220	229	Right-handed alpha
Helix 20	AC2	C	241	248	Right-handed alpha
Helix 21	AC3	C	276	289	Right-handed alpha
Helix 22	AC4	D	101	106	Right-handed alpha
Helix 23	AC5	D	106	114	Right-handed alpha
Helix 24	AC6	D	129	133	Right-handed 310
Helix 25	AC7	D	134	138	Right-handed 310
Helix 26	AC8	D	167	172	Right-handed alpha
Helix 27	AC9	D	179	186	Right-handed 310
Helix 28	AD1	D	220	230	Right-handed alpha
Helix 29	AD2	D	238	246	Right-handed alpha
Helix 30	AD3	D	270	274	Right-handed 310
Helix 31	AD4	D	275	287	Right-handed alpha
Helix 32	AD5	E	101	106	Right-handed alpha
Helix 33	AD6	E	106	117	Right-handed alpha
Helix 34	AD7	E	167	173	Right-handed alpha
Helix 35	AD8	E	179	186	Right-handed 310
Helix 36	AD9	E	219	228	Right-handed alpha
Helix 37	AE1	E	241	247	Right-handed alpha
Helix 38	AE2	E	275	289	Right-handed alpha
Helix 39	AE3	F	106	117	Right-handed alpha
Helix 40	AE4	F	167	172	Right-handed alpha
Helix 41	AE5	F	179	186	Right-handed 310
Helix 42	AE6	F	219	229	Right-handed alpha
Helix 43	AE7	F	238	246	Right-handed alpha
Helix 44	AE8	F	276	287	Right-handed alpha

There are 9 sheets in PDB entry 5X0N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	197	200	anti-parallel
Strand 3	C	205	209	anti-parallel
Strand 4	A	153	160	anti-parallel
Strand 5	A	262	268	anti-parallel
Strand 6	A	140	144	anti-parallel
Strand 7	A	93	98	parallel
Strand 8	A	122	127	parallel
Strand 9	D	215	217	parallel
Strand 10	D	188	191	parallel
Strand 11	D	233	237	parallel
Strand 12	D	162	166	anti-parallel
Strand 13	D	251	252	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	258	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	233	237	anti-parallel
Strand 4	A	188	191	parallel
Strand 5	A	215	217	parallel
Strand 6	D	122	127	parallel
Strand 7	D	93	98	parallel
Strand 8	D	140	144	parallel
Strand 9	D	262	268	anti-parallel
Strand 10	D	153	160	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	205	209	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	140	144	anti-parallel
Strand 6	C	93	97	parallel
Strand 7	C	122	126	parallel
Strand 8	B	215	217	parallel
Strand 9	B	188	191	parallel
Strand 10	B	233	237	parallel
Strand 11	B	153	166	anti-parallel
Strand 12	B	251	253	anti-parallel

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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	126	first strand
Strand 2	E	92	97	parallel
Strand 3	E	140	144	parallel
Strand 4	E	262	268	anti-parallel
Strand 5	E	153	160	anti-parallel
Strand 6	B	205	209	anti-parallel
Strand 7	B	197	200	anti-parallel
Strand 8	B	258	268	anti-parallel
Strand 9	B	140	144	anti-parallel
Strand 10	B	93	98	parallel
Strand 11	B	122	127	parallel
Strand 12	C	215	217	parallel
Strand 13	C	188	191	parallel
Strand 14	C	233	237	parallel
Strand 15	C	162	166	anti-parallel
Strand 16	C	251	252	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	233	237	anti-parallel
Strand 4	C	188	191	parallel
Strand 5	C	215	217	parallel
Strand 6	B	122	127	parallel
Strand 7	B	93	98	parallel
Strand 8	B	140	144	parallel
Strand 9	B	258	268	anti-parallel
Strand 10	B	153	166	anti-parallel
Strand 11	E	205	209	anti-parallel
Strand 12	E	197	200	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	209	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	258	259	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	253	first strand
Strand 2	E	162	166	anti-parallel
Strand 3	E	233	237	anti-parallel
Strand 4	E	188	191	parallel
Strand 5	E	215	217	parallel
Strand 6	F	121	127	parallel
Strand 7	F	92	98	parallel
Strand 8	F	140	144	parallel
Strand 9	F	262	268	anti-parallel
Strand 10	F	153	160	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	217	first strand
Strand 2	F	188	191	parallel
Strand 3	F	233	237	parallel
Strand 4	F	162	166	anti-parallel
Strand 5	F	251	252	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X0N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0N