Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X0O entry

There are 6 chains in PDB entry 5X0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 90	TYR 288
B	SER 90	TYR 288
C	GLY 88	TYR 288
D	SER 90	TYR 288
E	SER 90	TYR 288
F	ALA 89	TYR 288

There are 51 helices in PDB entry 5X0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	106	Right-handed alpha
Helix 2	AA2	A	106	117	Right-handed alpha
Helix 3	AA3	A	129	133	Right-handed 310
Helix 4	AA4	A	134	138	Right-handed 310
Helix 5	AA5	A	167	172	Right-handed alpha
Helix 6	AA6	A	179	186	Right-handed 310
Helix 7	AA7	A	219	229	Right-handed alpha
Helix 8	AA8	A	241	248	Right-handed alpha
Helix 9	AA9	A	275	287	Right-handed alpha
Helix 10	AB1	B	101	117	Right-handed alpha
Helix 11	AB2	B	129	133	Right-handed 310
Helix 12	AB3	B	134	138	Right-handed 310
Helix 13	AB4	B	167	173	Right-handed alpha
Helix 14	AB5	B	179	186	Right-handed 310
Helix 15	AB6	B	219	229	Right-handed alpha
Helix 16	AB7	B	241	247	Right-handed alpha
Helix 17	AB8	B	275	288	Right-handed alpha
Helix 18	AB9	C	101	106	Right-handed alpha
Helix 19	AC1	C	106	117	Right-handed alpha
Helix 20	AC2	C	134	138	Right-handed 310
Helix 21	AC3	C	167	174	Right-handed alpha
Helix 22	AC4	C	179	186	Right-handed 310
Helix 23	AC5	C	219	229	Right-handed alpha
Helix 24	AC6	C	241	248	Right-handed alpha
Helix 25	AC7	C	275	287	Right-handed alpha
Helix 26	AC8	D	101	106	Right-handed alpha
Helix 27	AC9	D	106	117	Right-handed alpha
Helix 28	AD1	D	129	133	Right-handed 310
Helix 29	AD2	D	134	138	Right-handed 310
Helix 30	AD3	D	167	174	Right-handed alpha
Helix 31	AD4	D	179	186	Right-handed 310
Helix 32	AD5	D	219	229	Right-handed alpha
Helix 33	AD6	D	238	247	Right-handed alpha
Helix 34	AD7	D	275	288	Right-handed alpha
Helix 35	AD8	E	101	106	Right-handed alpha
Helix 36	AD9	E	106	117	Right-handed alpha
Helix 37	AE1	E	129	133	Right-handed 310
Helix 38	AE2	E	134	138	Right-handed 310
Helix 39	AE3	E	167	172	Right-handed alpha
Helix 40	AE4	E	179	186	Right-handed 310
Helix 41	AE5	E	219	229	Right-handed alpha
Helix 42	AE6	E	241	248	Right-handed alpha
Helix 43	AE7	E	275	288	Right-handed alpha
Helix 44	AE8	F	101	106	Right-handed alpha
Helix 45	AE9	F	106	117	Right-handed alpha
Helix 46	AF1	F	134	138	Right-handed 310
Helix 47	AF2	F	167	174	Right-handed alpha
Helix 48	AF3	F	179	186	Right-handed 310
Helix 49	AF4	F	219	229	Right-handed alpha
Helix 50	AF5	F	238	248	Right-handed alpha
Helix 51	AF6	F	275	288	Right-handed alpha

There are 11 sheets in PDB entry 5X0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	160	first strand
Strand 2	A	262	268	anti-parallel
Strand 3	A	140	144	anti-parallel
Strand 4	A	93	98	parallel
Strand 5	A	122	127	parallel
Strand 6	B	215	217	parallel
Strand 7	B	188	191	parallel
Strand 8	B	233	237	parallel
Strand 9	B	162	166	anti-parallel
Strand 10	B	251	252	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	233	237	anti-parallel
Strand 4	A	188	191	parallel
Strand 5	A	215	217	parallel
Strand 6	B	120	127	parallel
Strand 7	B	91	98	parallel
Strand 8	B	140	144	parallel
Strand 9	B	262	268	anti-parallel
Strand 10	B	153	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	206	209	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	257	259	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	153	166	anti-parallel
Strand 3	C	233	237	anti-parallel
Strand 4	C	188	191	parallel
Strand 5	C	215	217	parallel
Strand 6	F	120	127	parallel
Strand 7	F	91	98	parallel
Strand 8	F	140	144	parallel
Strand 9	F	259	268	anti-parallel
Strand 10	F	153	166	anti-parallel
Strand 11	F	251	252	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	153	166	anti-parallel
Strand 3	C	259	268	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	91	98	parallel
Strand 6	C	120	127	parallel
Strand 7	F	215	217	parallel
Strand 8	F	188	191	parallel
Strand 9	F	233	237	parallel
Strand 10	F	153	166	anti-parallel
Strand 11	F	251	252	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	200	first strand
Strand 2	C	206	209	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	152	166	anti-parallel
Strand 3	D	257	269	anti-parallel
Strand 4	D	140	144	anti-parallel
Strand 5	D	91	98	parallel
Strand 6	D	120	127	parallel
Strand 7	E	215	217	parallel
Strand 8	E	188	191	parallel
Strand 9	E	233	237	parallel
Strand 10	E	152	166	anti-parallel
Strand 11	E	251	252	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	209	first strand
Strand 2	D	197	201	anti-parallel
Strand 3	D	257	269	anti-parallel
Strand 4	D	152	166	anti-parallel
Strand 5	D	233	237	anti-parallel
Strand 6	D	188	191	parallel
Strand 7	D	215	217	parallel
Strand 8	E	120	127	parallel
Strand 9	E	91	98	parallel
Strand 10	E	140	144	parallel
Strand 11	E	257	269	anti-parallel
Strand 12	E	197	201	anti-parallel
Strand 13	E	206	209	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	209	first strand
Strand 2	E	197	201	anti-parallel
Strand 3	E	257	269	anti-parallel
Strand 4	E	152	166	anti-parallel
Strand 5	E	251	252	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0O