Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X0R entry

There are 4 chains in PDB entry 5X0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 142THR 432
B
 GLY 139PHE 429
C
 SER 682GLU 696
D
 SER 682GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5X0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
144 162Right-handed alpha
Helix 2
AA2
A
239 260Right-handed alpha
Helix 3
AA3
A
261 266Right-handed alpha
Helix 4
AA4
A
268 290Right-handed alpha
Helix 5
AA5
A
321 333Right-handed alpha
Helix 6
AA6
A
336 349Right-handed alpha
Helix 7
AA7
A
358 381Right-handed alpha
Helix 8
AA8
A
388 418Right-handed alpha
Helix 9
AA9
A
422 430Right-handed alpha
Helix 10
AB1
B
144 162Right-handed alpha
Helix 11
AB2
B
239 260Right-handed alpha
Helix 12
AB3
B
261 266Right-handed alpha
Helix 13
AB4
B
268 290Right-handed alpha
Helix 14
AB5
B
317 320Right-handed 310
Helix 15
AB6
B
321 333Right-handed alpha
Helix 16
AB7
B
336 349Right-handed alpha
Helix 17
AB8
B
358 379Right-handed alpha
Helix 18
AB9
B
383 387Right-handed 310
Helix 19
AC1
B
388 418Right-handed alpha
Helix 20
AC2
B
422 429Right-handed alpha
Helix 21
AC3
C
687 696Right-handed alpha
Helix 22
AC4
D
687 696Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5X0R.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
304 307anti-parallel
Strand 4
A
212 216anti-parallel
Strand 5
A
222 226anti-parallel
Strand 6
B
222 226anti-parallel
Strand 7
B
211 216anti-parallel
Strand 8
B
304 308anti-parallel
Strand 9
B
298 301anti-parallel
Strand 10
B
292 293anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il