Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X0T entry

There are 6 chains in PDB entry 5X0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 21	ARG 235
C	VAL 21	ARG 235
B	ASN 21	GLU 233
D	ASN 21	GLU 233
E	THR 25	LEU 102
F	THR 25	LEU 102

There are 20 helices in PDB entry 5X0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	95	97	Right-handed 310
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	178	180	Right-handed 310
Helix 6	AA6	A	208	213	Right-handed alpha
Helix 7	AA7	A	222	225	Right-handed 310
Helix 8	AA8	C	47	51	Right-handed 310
Helix 9	AA9	C	72	76	Right-handed 310
Helix 10	AB1	C	95	97	Right-handed 310
Helix 11	AB2	C	108	112	Right-handed 310
Helix 12	AB3	C	178	180	Right-handed 310
Helix 13	AB4	C	208	213	Right-handed alpha
Helix 14	AB5	C	222	225	Right-handed 310
Helix 15	AB6	B	99	103	Right-handed 310
Helix 16	AB7	B	141	148	Right-handed alpha
Helix 17	AB8	B	203	209	Right-handed alpha
Helix 18	AB9	D	99	103	Right-handed 310
Helix 19	AC1	D	141	148	Right-handed alpha
Helix 20	AC2	D	203	209	Right-handed alpha

There are 24 sheets in PDB entry 5X0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	26	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	89	94	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	129	133	parallel
Strand 3	A	113	119	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	65	70	anti-parallel
Strand 6	A	79	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	157	167	anti-parallel
Strand 3	A	196	206	anti-parallel
Strand 4	A	185	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	157	167	anti-parallel
Strand 3	A	196	206	anti-parallel
Strand 4	A	191	193	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	226	232	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	129	133	parallel
Strand 3	C	113	119	anti-parallel
Strand 4	C	53	58	anti-parallel
Strand 5	C	65	70	anti-parallel
Strand 6	C	79	81	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	157	167	anti-parallel
Strand 3	C	196	206	anti-parallel
Strand 4	C	186	187	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	157	167	anti-parallel
Strand 3	C	196	206	anti-parallel
Strand 4	C	191	193	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	226	231	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	39	45	anti-parallel
Strand 3	B	90	95	anti-parallel
Strand 4	B	82	87	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	122	126	parallel
Strand 3	B	104	110	anti-parallel
Strand 4	B	53	58	anti-parallel
Strand 5	B	65	69	anti-parallel
Strand 6	B	73	74	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	122	126	parallel
Strand 3	B	104	110	anti-parallel
Strand 4	B	117	118	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	149	159	anti-parallel
Strand 3	B	193	202	anti-parallel
Strand 4	B	179	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	211	218	anti-parallel
Strand 4	B	221	230	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	39	45	anti-parallel
Strand 3	D	90	95	anti-parallel
Strand 4	D	82	87	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	122	126	parallel
Strand 3	D	104	110	anti-parallel
Strand 4	D	53	58	anti-parallel
Strand 5	D	65	69	anti-parallel
Strand 6	D	73	74	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	122	126	parallel
Strand 3	D	104	110	anti-parallel
Strand 4	D	117	118	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	179	183	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	165	170	anti-parallel
Strand 3	D	211	218	anti-parallel
Strand 4	D	221	230	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	33	first strand
Strand 2	E	36	43	anti-parallel
Strand 3	E	71	76	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	65	first strand
Strand 2	E	52	57	anti-parallel
Strand 3	E	83	90	anti-parallel
Strand 4	E	95	101	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	33	first strand
Strand 2	F	36	43	anti-parallel
Strand 3	F	71	76	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	65	first strand
Strand 2	F	52	57	anti-parallel
Strand 3	F	83	90	anti-parallel
Strand 4	F	96	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0T