Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X0Y entry

There are 11 chains in PDB entry 5X0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37ARG 134
B
 ALA 15GLY 101
C
 ALA 12LYS 118
D
 THR 29ALA 121
E
 ARG 40ARG 134
F
 ARG 17GLY 102
G
 ALA 12LYS 118
H
 THR 29ALA 121
I
 T 2 T 147
J
 A 1 A 146
O
 LEU 670ARG 1349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 5X0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
85 114Right-handed alpha
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
B
30 42Right-handed alpha
Helix 6
AA6
B
49 77Right-handed alpha
Helix 7
AA7
B
82 93Right-handed alpha
Helix 8
AA8
C
16 22Right-handed alpha
Helix 9
AA9
C
26 37Right-handed alpha
Helix 10
AB1
C
45 73Right-handed alpha
Helix 11
AB2
C
79 90Right-handed alpha
Helix 12
AB3
C
90 98Right-handed alpha
Helix 13
AB4
C
112 116Right-handed 310
Helix 14
AB5
D
34 44Right-handed alpha
Helix 15
AB6
D
52 81Right-handed alpha
Helix 16
AB7
D
87 99Right-handed alpha
Helix 17
AB8
D
101 120Right-handed alpha
Helix 18
AB9
E
44 56Right-handed alpha
Helix 19
AC1
E
63 76Right-handed alpha
Helix 20
AC2
E
85 114Right-handed alpha
Helix 21
AC3
E
120 132Right-handed alpha
Helix 22
AC4
F
24 29Right-handed alpha
Helix 23
AC5
F
30 42Right-handed alpha
Helix 24
AC6
F
49 77Right-handed alpha
Helix 25
AC7
F
82 93Right-handed alpha
Helix 26
AC8
G
16 22Right-handed alpha
Helix 27
AC9
G
26 37Right-handed alpha
Helix 28
AD1
G
45 73Right-handed alpha
Helix 29
AD2
G
79 90Right-handed alpha
Helix 30
AD3
G
90 98Right-handed alpha
Helix 31
AD4
G
112 116Right-handed 310
Helix 32
AD5
H
34 44Right-handed alpha
Helix 33
AD6
H
52 81Right-handed alpha
Helix 34
AD7
H
87 99Right-handed alpha
Helix 35
AD8
H
101 120Right-handed alpha
Helix 36
AD9
O
671 689Right-handed alpha
Helix 37
AE1
O
744 749Right-handed alpha
Helix 38
AE2
O
769 784Right-handed alpha
Helix 39
AE3
O
797 812Right-handed alpha
Helix 40
AE4
O
824 838Right-handed alpha
Helix 41
AE5
O
849 863Right-handed alpha
Helix 42
AE6
O
872 886Right-handed alpha
Helix 43
AE7
O
895 901Right-handed 310
Helix 44
AE8
O
905 914Right-handed alpha
Helix 45
AE9
O
932 942Right-handed alpha
Helix 46
AF1
O
942 958Right-handed alpha
Helix 47
AF2
O
973 979Right-handed alpha
Helix 48
AF3
O
980 988Right-handed alpha
Helix 49
AF4
O
995 1000Right-handed alpha
Helix 50
AF5
O
1020 1032Right-handed alpha
Helix 51
AF6
O
1049 1061Right-handed alpha
Helix 52
AF7
O
1066 1073Right-handed alpha
Helix 53
AF8
O
1081 1086Right-handed alpha
Helix 54
AF9
O
1086 1103Right-handed alpha
Helix 55
AG1
O
1113 1127Right-handed alpha
Helix 56
AG2
O
1138 1150Right-handed alpha
Helix 57
AG3
O
1163 1168Right-handed alpha
Helix 58
AG4
O
1187 1196Right-handed alpha
Helix 59
AG5
O
1216 1243Right-handed alpha
Helix 60
AG6
O
1246 1267Right-handed alpha
Helix 61
AG7
O
1279 1287Right-handed alpha
Helix 62
AG8
O
1290 1307Right-handed alpha
Helix 63
AG9
O
1337 1348Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 5X0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
D
85 86parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
D
50 51parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
F
96 97parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
85 86parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
77 78first strand
Strand 2
H
50 51parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
868 871first strand
Strand 2
O
819 822parallel
Strand 3
O
888 893parallel
Strand 4
O
916 922parallel
Strand 5
O
788 790parallel
Strand 6
O
991 992parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1007 1008first strand
Strand 2
O
1207 1208parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1130 1132first strand
Strand 2
O
1158 1160parallel
Strand 3
O
1106 1108parallel
Strand 4
O
1177 1178parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il