Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X0Z entry

There are 5 chains in PDB entry 5X0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 262
B	MET 1	SER 262
C	MET 1	SER 262
D	MET 1	SER 262
E	ARG 47	SER 228

There are 59 helices in PDB entry 5X0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	68	Right-handed alpha
Helix 2	AA2	A	83	91	Right-handed alpha
Helix 3	AA3	A	103	108	Right-handed alpha
Helix 4	AA4	A	109	111	Right-handed 310
Helix 5	AA5	A	116	122	Right-handed alpha
Helix 6	AA6	A	131	135	Right-handed 310
Helix 7	AA7	A	150	159	Right-handed alpha
Helix 8	AA8	A	177	190	Right-handed alpha
Helix 9	AA9	A	224	231	Right-handed alpha
Helix 10	AB1	A	238	245	Right-handed alpha
Helix 11	AB2	A	249	256	Right-handed alpha
Helix 12	AB3	B	55	68	Right-handed alpha
Helix 13	AB4	B	83	91	Right-handed alpha
Helix 14	AB5	B	103	108	Right-handed alpha
Helix 15	AB6	B	109	113	Right-handed 310
Helix 16	AB7	B	116	122	Right-handed alpha
Helix 17	AB8	B	131	135	Right-handed 310
Helix 18	AB9	B	150	159	Right-handed alpha
Helix 19	AC1	B	177	190	Right-handed alpha
Helix 20	AC2	B	224	230	Right-handed alpha
Helix 21	AC3	B	238	245	Right-handed alpha
Helix 22	AC4	B	249	257	Right-handed alpha
Helix 23	AC5	B	258	260	Right-handed 310
Helix 24	AC6	C	55	68	Right-handed alpha
Helix 25	AC7	C	83	91	Right-handed alpha
Helix 26	AC8	C	103	108	Right-handed alpha
Helix 27	AC9	C	109	111	Right-handed 310
Helix 28	AD1	C	116	122	Right-handed alpha
Helix 29	AD2	C	131	135	Right-handed 310
Helix 30	AD3	C	150	159	Right-handed alpha
Helix 31	AD4	C	177	190	Right-handed alpha
Helix 32	AD5	C	224	230	Right-handed alpha
Helix 33	AD6	C	238	245	Right-handed alpha
Helix 34	AD7	C	249	257	Right-handed alpha
Helix 35	AD8	C	258	260	Right-handed 310
Helix 36	AD9	D	54	68	Right-handed alpha
Helix 37	AE1	D	83	91	Right-handed alpha
Helix 38	AE2	D	103	108	Right-handed alpha
Helix 39	AE3	D	109	111	Right-handed 310
Helix 40	AE4	D	116	122	Right-handed alpha
Helix 41	AE5	D	131	135	Right-handed 310
Helix 42	AE6	D	150	159	Right-handed alpha
Helix 43	AE7	D	177	190	Right-handed alpha
Helix 44	AE8	D	224	231	Right-handed alpha
Helix 45	AE9	D	238	245	Right-handed alpha
Helix 46	AF1	D	249	257	Right-handed alpha
Helix 47	AF2	E	49	76	Right-handed alpha
Helix 48	AF3	E	91	97	Right-handed alpha
Helix 49	AF4	E	121	134	Right-handed alpha
Helix 50	AF5	E	147	154	Right-handed alpha
Helix 51	AF6	E	154	170	Right-handed alpha
Helix 52	AF7	E	223	232	Right-handed alpha
Helix 53	AF8	E	233	237	Right-handed 310
Helix 54	AF9	F	49	76	Right-handed alpha
Helix 55	AG1	F	91	97	Right-handed alpha
Helix 56	AG2	F	121	134	Right-handed alpha
Helix 57	AG3	F	147	154	Right-handed alpha
Helix 58	AG4	F	154	170	Right-handed alpha
Helix 59	AG5	F	223	229	Right-handed alpha

There are 12 sheets in PDB entry 5X0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	11	16	anti-parallel
Strand 3	B	11	16	anti-parallel
Strand 4	B	2	8	anti-parallel
Strand 5	E	189	190	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	25	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	40	45	anti-parallel
Strand 4	A	48	51	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	96	100	parallel
Strand 3	A	75	79	parallel
Strand 4	A	140	145	parallel
Strand 5	A	161	171	parallel
Strand 6	A	209	214	anti-parallel
Strand 7	A	194	198	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	25	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	40	45	anti-parallel
Strand 4	B	48	51	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	96	100	parallel
Strand 3	B	75	79	parallel
Strand 4	B	140	145	parallel
Strand 5	B	161	172	parallel
Strand 6	B	208	214	anti-parallel
Strand 7	B	194	198	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	8	first strand
Strand 2	D	11	16	anti-parallel
Strand 3	C	11	16	anti-parallel
Strand 4	C	2	8	anti-parallel
Strand 5	F	189	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	40	45	anti-parallel
Strand 4	C	48	51	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	96	100	parallel
Strand 3	C	75	79	parallel
Strand 4	C	140	145	parallel
Strand 5	C	161	172	parallel
Strand 6	C	208	214	anti-parallel
Strand 7	C	194	198	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	25	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	40	45	anti-parallel
Strand 4	D	48	51	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	96	100	parallel
Strand 3	D	75	79	parallel
Strand 4	D	140	145	parallel
Strand 5	D	161	171	parallel
Strand 6	D	209	214	anti-parallel
Strand 7	D	194	198	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	90	first strand
Strand 2	E	197	207	anti-parallel
Strand 3	E	210	219	anti-parallel
Strand 4	E	115	120	anti-parallel
Strand 5	E	104	108	anti-parallel
Strand 6	E	178	183	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	90	first strand
Strand 2	F	197	207	anti-parallel
Strand 3	F	210	219	anti-parallel
Strand 4	F	115	120	anti-parallel
Strand 5	F	103	108	anti-parallel
Strand 6	F	178	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X0Z