Analysis of interatomic Contacts of Structural Units in PDB entry:
5X1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X1E entry

There are 6 chains in PDB entry 5X1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5ASP 114
B
 PRO 2GLY 149
C
 GLU 672LYS 773
D
 ASP 4ASP 114
E
 PRO 2GLY 149
F
 ALA 674LYS 773
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5X1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
28 33Right-handed alpha
Helix 3
AA3
A
38 55Right-handed alpha
Helix 4
AA4
A
81 100Right-handed alpha
Helix 5
AA5
A
109 114Right-handed 310
Helix 6
AA6
B
5 15Right-handed alpha
Helix 7
AA7
B
19 30Right-handed alpha
Helix 8
AA8
B
39 53Right-handed alpha
Helix 9
AA9
B
60 64Right-handed 310
Helix 10
AB1
B
66 75Right-handed alpha
Helix 11
AB2
B
78 91Right-handed alpha
Helix 12
AB3
B
95 108Right-handed alpha
Helix 13
AB4
B
113 135Right-handed alpha
Helix 14
AB5
B
136 148Right-handed alpha
Helix 15
AB6
C
694 700Right-handed alpha
Helix 16
AB7
C
704 719Right-handed alpha
Helix 17
AB8
C
722 741Right-handed alpha
Helix 18
AB9
C
752 773Right-handed alpha
Helix 19
AC1
D
5 16Right-handed alpha
Helix 20
AC2
D
28 33Right-handed alpha
Helix 21
AC3
D
38 55Right-handed alpha
Helix 22
AC4
D
81 100Right-handed alpha
Helix 23
AC5
D
109 114Right-handed 310
Helix 24
AC6
E
5 15Right-handed alpha
Helix 25
AC7
E
19 30Right-handed alpha
Helix 26
AC8
E
39 53Right-handed alpha
Helix 27
AC9
E
66 77Right-handed alpha
Helix 28
AD1
E
78 93Right-handed alpha
Helix 29
AD2
E
95 108Right-handed alpha
Helix 30
AD3
E
113 135Right-handed alpha
Helix 31
AD4
E
136 149Right-handed alpha
Helix 32
AD5
F
694 700Right-handed alpha
Helix 33
AD6
F
704 719Right-handed alpha
Helix 34
AD7
F
722 724Right-handed 310
Helix 35
AD8
F
725 742Right-handed alpha
Helix 36
AD9
F
752 773Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5X1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
20 22anti-parallel
Strand 3
A
106 107parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
72 76anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 27first strand
Strand 2
D
20 22anti-parallel
Strand 3
D
106 107parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 64first strand
Strand 2
D
72 76anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il