Analysis of interatomic Contacts of Structural Units in PDB entry:
5X2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X2D entry

There are 3 chains in PDB entry 5X2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83GLU 177
B
 PRO 83GLU 177
C
 PRO 83GLU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5X2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 112Right-handed alpha
Helix 2
AA2
A
117 137Right-handed alpha
Helix 3
AA3
B
97 112Right-handed alpha
Helix 4
AA4
B
117 137Right-handed alpha
Helix 5
AA5
C
97 112Right-handed alpha
Helix 6
AA6
C
117 136Right-handed alpha
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There are 2 sheets in PDB entry 5X2D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 95first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
169 174anti-parallel
Strand 4
A
140 151anti-parallel
Strand 5
C
140 151anti-parallel
Strand 6
C
169 174anti-parallel
Strand 7
C
160 165anti-parallel
Strand 8
C
89 95anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 95first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
169 174anti-parallel
Strand 4
B
140 145anti-parallel
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