Analysis of interatomic Contacts of Structural Units in PDB entry:
5X3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X3E entry

There are 2 chains in PDB entry 5X3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 25ILE 426
B
 ASP 26ILE 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5X3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 102Right-handed alpha
Helix 2
AA2
A
117 123Right-handed alpha
Helix 3
AA3
A
132 145Right-handed alpha
Helix 4
AA4
A
166 180Right-handed alpha
Helix 5
AA5
A
258 274Right-handed alpha
Helix 6
AA6
A
283 287Right-handed 310
Helix 7
AA7
A
312 316Right-handed 310
Helix 8
AA8
A
342 368Right-handed alpha
Helix 9
AA9
A
377 380Right-handed 310
Helix 10
AB1
A
381 387Right-handed alpha
Helix 11
AB2
A
387 392Right-handed alpha
Helix 12
AB3
A
406 408Right-handed 310
Helix 13
AB4
A
409 417Right-handed alpha
Helix 14
AB5
A
418 420Right-handed 310
Helix 15
AB6
B
84 102Right-handed alpha
Helix 16
AB7
B
117 123Right-handed alpha
Helix 17
AB8
B
132 145Right-handed alpha
Helix 18
AB9
B
166 177Right-handed alpha
Helix 19
AC1
B
258 274Right-handed alpha
Helix 20
AC2
B
275 277Right-handed 310
Helix 21
AC3
B
283 287Right-handed 310
Helix 22
AC4
B
312 316Right-handed 310
Helix 23
AC5
B
345 366Right-handed alpha
Helix 24
AC6
B
377 380Right-handed 310
Helix 25
AC7
B
381 387Right-handed alpha
Helix 26
AC8
B
387 392Right-handed alpha
Helix 27
AC9
B
406 408Right-handed 310
Helix 28
AD1
B
409 417Right-handed alpha
Helix 29
AD2
B
418 420Right-handed 310
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There are 10 sheets in PDB entry 5X3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
29 34parallel
Strand 3
A
396 403parallel
Strand 4
A
106 111parallel
Strand 5
A
317 325parallel
Strand 6
A
288 299anti-parallel
Strand 7
A
205 217anti-parallel
Strand 8
A
220 223anti-parallel
Strand 9
A
235 236anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
29 34parallel
Strand 3
A
396 403parallel
Strand 4
A
106 111parallel
Strand 5
A
317 325parallel
Strand 6
A
288 299anti-parallel
Strand 7
A
205 217anti-parallel
Strand 8
A
254 256anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
71 74anti-parallel
Strand 4
A
422 425anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
161 164anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
246 248anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
29 34parallel
Strand 3
B
396 403parallel
Strand 4
B
106 111parallel
Strand 5
B
317 325parallel
Strand 6
B
288 299anti-parallel
Strand 7
B
205 217anti-parallel
Strand 8
B
220 223anti-parallel
Strand 9
B
235 236anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
29 34parallel
Strand 3
B
396 403parallel
Strand 4
B
106 111parallel
Strand 5
B
317 325parallel
Strand 6
B
288 299anti-parallel
Strand 7
B
205 217anti-parallel
Strand 8
B
254 256anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
72 74anti-parallel
Strand 4
B
422 424anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 157first strand
Strand 2
B
161 164anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
246 248anti-parallel
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