Analysis of interatomic Contacts of Structural Units in PDB entry:
5X3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X3F entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5X3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ALA 501
B
 LYS 107TRP 335
B
 LEU 337PRO 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5X3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
54 59Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
100 114Right-handed alpha
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
149 166Right-handed alpha
Helix 9
AA9
A
167 169Right-handed 310
Helix 10
AB1
A
186 190Right-handed 310
Helix 11
AB2
A
193 198Right-handed alpha
Helix 12
AB3
A
199 201Right-handed 310
Helix 13
AB4
A
214 228Right-handed alpha
Helix 14
AB5
A
252 264Right-handed alpha
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
A
299 304Right-handed 310
Helix 17
AB8
A
316 320Right-handed alpha
Helix 18
AB9
A
321 324Right-handed 310
Helix 19
AC1
A
336 353Right-handed alpha
Helix 20
AC2
A
354 377Right-handed alpha
Helix 21
AC3
A
397 411Right-handed alpha
Helix 22
AC4
A
434 463Right-handed alpha
Helix 23
AC5
A
468 482Right-handed alpha
Helix 24
AC6
A
483 486Right-handed 310
Helix 25
AC7
A
487 498Right-handed alpha
Helix 26
AC8
B
108 118Right-handed alpha
Helix 27
AC9
B
123 137Right-handed alpha
Helix 28
AD1
B
140 171Right-handed alpha
Helix 29
AD2
B
178 180Right-handed 310
Helix 30
AD3
B
215 222Right-handed alpha
Helix 31
AD4
B
223 237Right-handed alpha
Helix 32
AD5
B
266 275Right-handed alpha
Helix 33
AD6
B
278 299Right-handed alpha
Helix 34
AD7
B
307 309Right-handed 310
Helix 35
AD8
B
340 344Right-handed 310
Helix 36
AD9
B
345 351Right-handed alpha
Helix 37
AE1
B
356 373Right-handed alpha
Helix 38
AE2
B
382 391Right-handed alpha
Helix 39
AE3
B
401 412Right-handed alpha
Helix 40
AE4
B
427 432Right-handed alpha
Helix 41
AE5
B
433 437Right-handed 310
Helix 42
AE6
B
440 447Right-handed alpha
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There are 6 sheets in PDB entry 5X3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
83 86anti-parallel
Strand 4
A
413 414parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 147first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
295 298anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
232 237parallel
Strand 6
A
172 177parallel
Strand 7
A
207 211parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 387first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
424 427anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 190first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
207 214anti-parallel
Strand 4
B
254 260anti-parallel
Strand 5
B
245 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
328 329anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 313first strand
Strand 2
B
319 321anti-parallel
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