Analysis of interatomic Contacts of Structural Units in PDB entry:
5X3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X3V entry

There are 2 chains in PDB entry 5X3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 22HIS 483
B
 TRP 22HIS 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5X3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
32 49Right-handed alpha
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
69 74Right-handed 310
Helix 5
AA5
A
88 106Right-handed alpha
Helix 6
AA6
A
121 134Right-handed alpha
Helix 7
AA7
A
163 169Right-handed alpha
Helix 8
AA8
A
184 196Right-handed alpha
Helix 9
AA9
A
212 224Right-handed alpha
Helix 10
AB1
A
234 240Right-handed alpha
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
A
290 299Right-handed alpha
Helix 13
AB4
A
307 323Right-handed alpha
Helix 14
AB5
A
323 347Right-handed alpha
Helix 15
AB6
A
353 355Right-handed 310
Helix 16
AB7
A
371 382Right-handed alpha
Helix 17
AB8
A
407 412Right-handed alpha
Helix 18
AB9
A
416 441Right-handed alpha
Helix 19
AC1
A
443 454Right-handed alpha
Helix 20
AC2
A
454 474Right-handed alpha
Helix 21
AC3
B
27 32Right-handed alpha
Helix 22
AC4
B
32 49Right-handed alpha
Helix 23
AC5
B
60 68Right-handed alpha
Helix 24
AC6
B
69 74Right-handed 310
Helix 25
AC7
B
88 106Right-handed alpha
Helix 26
AC8
B
121 134Right-handed alpha
Helix 27
AC9
B
163 169Right-handed alpha
Helix 28
AD1
B
184 196Right-handed alpha
Helix 29
AD2
B
212 223Right-handed alpha
Helix 30
AD3
B
234 240Right-handed alpha
Helix 31
AD4
B
245 249Right-handed 310
Helix 32
AD5
B
290 299Right-handed alpha
Helix 33
AD6
B
307 322Right-handed alpha
Helix 34
AD7
B
323 346Right-handed alpha
Helix 35
AD8
B
353 355Right-handed 310
Helix 36
AD9
B
371 381Right-handed alpha
Helix 37
AE1
B
407 412Right-handed alpha
Helix 38
AE2
B
416 441Right-handed alpha
Helix 39
AE3
B
443 454Right-handed alpha
Helix 40
AE4
B
454 474Right-handed alpha
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There are 6 sheets in PDB entry 5X3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
384 385parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
226 230parallel
Strand 5
A
199 202parallel
Strand 6
A
139 141parallel
Strand 7
A
170 171parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
387 389anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
384 385parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
252 256anti-parallel
Strand 4
B
226 230parallel
Strand 5
B
199 202parallel
Strand 6
B
139 141parallel
Strand 7
B
170 171parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 351first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
402 406anti-parallel
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