Analysis of interatomic Contacts of Structural Units in PDB entry:
5X42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X42 entry

There are 4 chains in PDB entry 5X42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13ALA 207
B
 GLU 591GLU 659
C
 CYS 14ALA 208
D
 PRO 593GLU 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5X42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
34 48Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
90 96Right-handed 310
Helix 6
AA6
A
113 130Right-handed alpha
Helix 7
AA7
A
134 148Right-handed alpha
Helix 8
AA8
A
148 157Right-handed alpha
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
A
177 185Right-handed alpha
Helix 11
AB2
A
197 207Right-handed alpha
Helix 12
AB3
B
596 614Right-handed alpha
Helix 13
AB4
B
625 638Right-handed alpha
Helix 14
AB5
B
642 658Right-handed alpha
Helix 15
AB6
C
23 33Right-handed alpha
Helix 16
AB7
C
34 48Right-handed alpha
Helix 17
AB8
C
76 78Right-handed 310
Helix 18
AB9
C
84 89Right-handed alpha
Helix 19
AC1
C
90 96Right-handed 310
Helix 20
AC2
C
113 130Right-handed alpha
Helix 21
AC3
C
134 148Right-handed alpha
Helix 22
AC4
C
148 157Right-handed alpha
Helix 23
AC5
C
162 173Right-handed alpha
Helix 24
AC6
C
177 186Right-handed alpha
Helix 25
AC7
C
194 196Right-handed 310
Helix 26
AC8
C
197 205Right-handed alpha
Helix 27
AC9
D
596 614Right-handed alpha
Helix 28
AD1
D
625 637Right-handed alpha
Helix 29
AD2
D
642 658Right-handed alpha
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There are 4 sheets in PDB entry 5X42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
80 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
188 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 67first strand
Strand 2
C
80 83anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 108first strand
Strand 2
C
188 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il