Analysis of interatomic Contacts of Structural Units in PDB entry:
5X5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X5H entry

There is 1 chain in PDB entry 5X5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3HIS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5X5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
9 17Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
81 94Right-handed alpha
Helix 5
AA5
A
107 117Right-handed alpha
Helix 6
AA6
A
118 122Right-handed 310
Helix 7
AA7
A
132 140Right-handed alpha
Helix 8
AA8
A
161 168Right-handed alpha
Helix 9
AA9
A
183 188Right-handed alpha
Helix 10
AB1
A
189 194Right-handed 310
Helix 11
AB2
A
221 236Right-handed alpha
Helix 12
AB3
A
240 252Right-handed alpha
Helix 13
AB4
A
253 274Right-handed alpha
Helix 14
AB5
A
291 299Right-handed alpha
Helix 15
AB6
A
312 324Right-handed alpha
Helix 16
AB7
A
348 352Right-handed 310
Helix 17
AB8
A
371 385Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5X5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
45 46anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
175 179parallel
Strand 5
A
144 150parallel
Strand 6
A
99 103parallel
Strand 7
A
124 128parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
362 366anti-parallel
Strand 4
A
339 341anti-parallel
Strand 5
A
328 329parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il