Analysis of interatomic Contacts of Structural Units in PDB entry:
5X5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X5M entry

There are 2 chains in PDB entry 5X5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 208
B
 LYS 4SER 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5X5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
13 16Right-handed 310
Helix 3
AA3
A
43 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
95 98Right-handed 310
Helix 6
AA6
A
112 127Right-handed alpha
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
156 172Right-handed alpha
Helix 9
AA9
A
195 198Right-handed 310
Helix 10
AB1
B
7 12Right-handed alpha
Helix 11
AB2
B
12 17Right-handed alpha
Helix 12
AB3
B
43 62Right-handed alpha
Helix 13
AB4
B
63 66Right-handed 310
Helix 14
AB5
B
88 90Right-handed 310
Helix 15
AB6
B
95 98Right-handed 310
Helix 16
AB7
B
112 127Right-handed alpha
Helix 17
AB8
B
153 155Right-handed 310
Helix 18
AB9
B
156 172Right-handed alpha
Helix 19
AC1
B
195 198Right-handed 310
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There are 2 sheets in PDB entry 5X5M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 38first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
183 187anti-parallel
Strand 5
A
200 206anti-parallel
Strand 6
A
136 151anti-parallel
Strand 7
A
23 38anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 38first strand
Strand 2
B
100 107anti-parallel
Strand 3
B
82 86anti-parallel
Strand 4
B
182 187anti-parallel
Strand 5
B
200 206anti-parallel
Strand 6
B
136 151anti-parallel
Strand 7
B
23 38anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il