Analysis of interatomic Contacts of Structural Units in PDB entry:
5X5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X5T entry

There are 2 chains in PDB entry 5X5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ALA 480
B
 THR 5ALA 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5X5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 63Right-handed alpha
Helix 2
AA2
A
66 84Right-handed alpha
Helix 3
AA3
A
84 97Right-handed alpha
Helix 4
AA4
A
99 122Right-handed alpha
Helix 5
AA5
A
158 172Right-handed alpha
Helix 6
AA6
A
184 198Right-handed alpha
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
232 246Right-handed alpha
Helix 9
AA9
A
267 281Right-handed alpha
Helix 10
AB1
A
282 285Right-handed 310
Helix 11
AB2
A
299 313Right-handed alpha
Helix 12
AB3
A
331 348Right-handed alpha
Helix 13
AB4
A
378 382Right-handed 310
Helix 14
AB5
A
397 406Right-handed alpha
Helix 15
AB6
A
420 431Right-handed alpha
Helix 16
AB7
A
463 469Right-handed 310
Helix 17
AB8
B
44 63Right-handed alpha
Helix 18
AB9
B
66 84Right-handed alpha
Helix 19
AC1
B
84 97Right-handed alpha
Helix 20
AC2
B
99 121Right-handed alpha
Helix 21
AC3
B
122 124Right-handed 310
Helix 22
AC4
B
158 172Right-handed alpha
Helix 23
AC5
B
184 198Right-handed alpha
Helix 24
AC6
B
210 219Right-handed alpha
Helix 25
AC7
B
232 246Right-handed alpha
Helix 26
AC8
B
267 281Right-handed alpha
Helix 27
AC9
B
282 285Right-handed 310
Helix 28
AD1
B
297 314Right-handed alpha
Helix 29
AD2
B
331 348Right-handed alpha
Helix 30
AD3
B
378 382Right-handed 310
Helix 31
AD4
B
397 406Right-handed alpha
Helix 32
AD5
B
420 431Right-handed alpha
Helix 33
AD6
B
453 455Right-handed 310
Helix 34
AD7
B
463 469Right-handed 310
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There are 9 sheets in PDB entry 5X5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
16 18anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
36 41anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
471 479anti-parallel
Strand 4
B
435 438parallel
Strand 5
B
413 417parallel
Strand 6
B
258 262parallel
Strand 7
B
290 296parallel
Strand 8
B
389 395parallel
Strand 9
B
369 372parallel
Strand 10
B
351 354anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
175 178parallel
Strand 3
A
148 151parallel
Strand 4
A
226 230parallel
Strand 5
A
249 253parallel
Strand 6
A
457 458anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
389 395parallel
Strand 4
A
290 296parallel
Strand 5
A
258 262parallel
Strand 6
A
413 417parallel
Strand 7
A
435 438parallel
Strand 8
B
471 479parallel
Strand 9
B
136 144anti-parallel
Strand 10
B
127 129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
453 454anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
16 18anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
36 41anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
175 178parallel
Strand 3
B
148 151parallel
Strand 4
B
226 230parallel
Strand 5
B
249 253parallel
Strand 6
B
457 458anti-parallel
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