Analysis of interatomic Contacts of Structural Units in PDB entry:
5X62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X62 entry

There are 2 chains in PDB entry 5X62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8ASN 395
B
 GLN 9ASN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5X62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
34 44Right-handed alpha
Helix 4
AA4
A
45 52Right-handed alpha
Helix 5
AA5
A
54 82Right-handed alpha
Helix 6
AA6
A
95 114Right-handed alpha
Helix 7
AA7
A
117 136Right-handed alpha
Helix 8
AA8
A
150 159Right-handed alpha
Helix 9
AA9
A
169 182Right-handed alpha
Helix 10
AB1
A
203 209Right-handed 310
Helix 11
AB2
A
234 240Right-handed alpha
Helix 12
AB3
A
254 265Right-handed alpha
Helix 13
AB4
A
282 293Right-handed alpha
Helix 14
AB5
A
344 356Right-handed alpha
Helix 15
AB6
B
10 24Right-handed alpha
Helix 16
AB7
B
24 34Right-handed alpha
Helix 17
AB8
B
34 44Right-handed alpha
Helix 18
AB9
B
45 52Right-handed alpha
Helix 19
AC1
B
54 82Right-handed alpha
Helix 20
AC2
B
87 91Right-handed 310
Helix 21
AC3
B
95 114Right-handed alpha
Helix 22
AC4
B
117 136Right-handed alpha
Helix 23
AC5
B
150 159Right-handed alpha
Helix 24
AC6
B
169 182Right-handed alpha
Helix 25
AC7
B
203 209Right-handed 310
Helix 26
AC8
B
234 240Right-handed alpha
Helix 27
AC9
B
254 265Right-handed alpha
Helix 28
AD1
B
282 293Right-handed alpha
Helix 29
AD2
B
344 356Right-handed alpha
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There are 6 sheets in PDB entry 5X62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
162 167parallel
Strand 3
A
141 145parallel
Strand 4
A
268 274parallel
Strand 5
A
294 304parallel
Strand 6
A
385 394anti-parallel
Strand 7
A
358 369anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
211 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
333 337anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
162 167parallel
Strand 3
B
141 145parallel
Strand 4
B
268 274parallel
Strand 5
B
294 304parallel
Strand 6
B
385 394anti-parallel
Strand 7
B
358 369anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
211 213anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 322first strand
Strand 2
B
329 337anti-parallel
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