Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X6B entry

There are 7 chains in PDB entry 5X6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	LEU 16	HIS 233
I	SER 235	LYS 396
J	VAL 13	HIS 233
J	SER 235	LYS 396
E	ILE 34	GLU 101
F	ILE 34	GLU 210
P	G 1	A 75

There are 46 helices in PDB entry 5X6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	19	24	Right-handed 310
Helix 2	AA2	I	38	43	Right-handed alpha
Helix 3	AA3	I	47	57	Right-handed alpha
Helix 4	AA4	I	77	90	Right-handed alpha
Helix 5	AA5	I	100	113	Right-handed alpha
Helix 6	AA6	I	126	136	Right-handed alpha
Helix 7	AA7	I	157	169	Right-handed alpha
Helix 8	AA8	I	190	200	Right-handed alpha
Helix 9	AA9	I	232	236	Right-handed alpha
Helix 10	AB1	I	248	256	Right-handed alpha
Helix 11	AB2	I	266	270	Right-handed 310
Helix 12	AB3	I	276	293	Right-handed alpha
Helix 13	AB4	I	295	312	Right-handed alpha
Helix 14	AB5	I	332	340	Right-handed alpha
Helix 15	AB6	I	344	346	Right-handed 310
Helix 16	AB7	I	347	356	Right-handed alpha
Helix 17	AB8	I	377	395	Right-handed alpha
Helix 18	AB9	J	20	26	Right-handed 310
Helix 19	AC1	J	38	43	Right-handed alpha
Helix 20	AC2	J	47	57	Right-handed alpha
Helix 21	AC3	J	78	91	Right-handed alpha
Helix 22	AC4	J	100	112	Right-handed alpha
Helix 23	AC5	J	126	136	Right-handed alpha
Helix 24	AC6	J	157	168	Right-handed alpha
Helix 25	AC7	J	190	201	Right-handed alpha
Helix 26	AC8	J	232	236	Right-handed alpha
Helix 27	AC9	J	251	256	Right-handed alpha
Helix 28	AD1	J	266	270	Right-handed 310
Helix 29	AD2	J	276	285	Right-handed alpha
Helix 30	AD3	J	285	294	Right-handed alpha
Helix 31	AD4	J	295	311	Right-handed alpha
Helix 32	AD5	J	312	314	Right-handed 310
Helix 33	AD6	J	332	340	Right-handed alpha
Helix 34	AD7	J	347	355	Right-handed alpha
Helix 35	AD8	J	377	395	Right-handed alpha
Helix 36	AD9	E	35	39	Right-handed 310
Helix 37	AE1	E	45	66	Right-handed alpha
Helix 38	AE2	E	73	97	Right-handed alpha
Helix 39	AE3	F	35	39	Right-handed 310
Helix 40	AE4	F	45	60	Right-handed alpha
Helix 41	AE5	F	60	66	Right-handed alpha
Helix 42	AE6	F	73	97	Right-handed alpha
Helix 43	AE7	F	117	128	Right-handed alpha
Helix 44	AE8	F	142	147	Right-handed alpha
Helix 45	AE9	F	158	177	Right-handed alpha
Helix 46	AF1	F	187	202	Right-handed alpha

There are 11 sheets in PDB entry 5X6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	36	first strand
Strand 2	I	358	359	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	98	first strand
Strand 2	I	243	247	anti-parallel
Strand 3	I	227	231	anti-parallel
Strand 4	I	205	208	parallel
Strand 5	I	173	179	parallel
Strand 6	I	118	122	parallel
Strand 7	I	139	143	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	145	147	first strand
Strand 2	I	153	154	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	316	318	first strand
Strand 2	I	328	331	anti-parallel
Strand 3	I	368	371	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	36	first strand
Strand 2	J	358	359	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	98	first strand
Strand 2	J	243	247	anti-parallel
Strand 3	J	227	231	anti-parallel
Strand 4	J	205	208	parallel
Strand 5	J	173	179	parallel
Strand 6	J	118	122	parallel
Strand 7	J	139	143	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	147	first strand
Strand 2	J	153	154	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	316	317	first strand
Strand 2	J	328	331	anti-parallel
Strand 3	J	368	371	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	F	71	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	F	42	43	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	112	115	parallel
Strand 3	F	181	184	parallel
Strand 4	F	204	205	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6B