Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X6C entry

There are 4 chains in PDB entry 5X6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 11	LYS 549
B	MET 11	LYS 549
E	ASN -1	LYS 24
F	ASN -1	LYS 24

There are 53 helices in PDB entry 5X6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	25	33	Right-handed alpha
Helix 3	AA3	A	34	37	Right-handed 310
Helix 4	AA4	A	41	45	Right-handed 310
Helix 5	AA5	A	57	72	Right-handed alpha
Helix 6	AA6	A	86	94	Right-handed alpha
Helix 7	AA7	A	96	101	Right-handed alpha
Helix 8	AA8	A	119	128	Right-handed alpha
Helix 9	AA9	A	133	149	Right-handed alpha
Helix 10	AB1	A	153	155	Right-handed 310
Helix 11	AB2	A	156	166	Right-handed alpha
Helix 12	AB3	A	168	180	Right-handed alpha
Helix 13	AB4	A	181	186	Right-handed 310
Helix 14	AB5	A	199	211	Right-handed alpha
Helix 15	AB6	A	212	214	Right-handed 310
Helix 16	AB7	A	254	268	Right-handed alpha
Helix 17	AB8	A	314	321	Right-handed alpha
Helix 18	AB9	A	334	343	Right-handed alpha
Helix 19	AC1	A	346	352	Right-handed alpha
Helix 20	AC2	A	353	356	Right-handed 310
Helix 21	AC3	A	361	367	Right-handed alpha
Helix 22	AC4	A	377	394	Right-handed alpha
Helix 23	AC5	A	460	472	Right-handed alpha
Helix 24	AC6	A	479	497	Right-handed alpha
Helix 25	AC7	A	512	515	Right-handed 310
Helix 26	AC8	A	520	530	Right-handed alpha
Helix 27	AC9	B	14	25	Right-handed alpha
Helix 28	AD1	B	25	33	Right-handed alpha
Helix 29	AD2	B	34	37	Right-handed 310
Helix 30	AD3	B	41	45	Right-handed 310
Helix 31	AD4	B	57	72	Right-handed alpha
Helix 32	AD5	B	86	94	Right-handed alpha
Helix 33	AD6	B	96	101	Right-handed alpha
Helix 34	AD7	B	118	128	Right-handed alpha
Helix 35	AD8	B	133	149	Right-handed alpha
Helix 36	AD9	B	156	166	Right-handed alpha
Helix 37	AE1	B	168	180	Right-handed alpha
Helix 38	AE2	B	181	186	Right-handed 310
Helix 39	AE3	B	199	211	Right-handed alpha
Helix 40	AE4	B	212	214	Right-handed 310
Helix 41	AE5	B	254	268	Right-handed alpha
Helix 42	AE6	B	314	320	Right-handed alpha
Helix 43	AE7	B	334	343	Right-handed alpha
Helix 44	AE8	B	346	352	Right-handed alpha
Helix 45	AE9	B	353	356	Right-handed 310
Helix 46	AF1	B	361	367	Right-handed alpha
Helix 47	AF2	B	377	395	Right-handed alpha
Helix 48	AF3	B	460	472	Right-handed alpha
Helix 49	AF4	B	479	497	Right-handed alpha
Helix 50	AF5	B	512	515	Right-handed 310
Helix 51	AF6	B	520	530	Right-handed alpha
Helix 52	AF7	E	0	24	Right-handed alpha
Helix 53	AF8	F	0	24	Right-handed alpha

There are 10 sheets in PDB entry 5X6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	218	227	parallel
Strand 3	A	240	249	anti-parallel
Strand 4	A	327	333	anti-parallel
Strand 5	A	304	312	anti-parallel
Strand 6	A	292	297	anti-parallel
Strand 7	A	274	278	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	106	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	517	519	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	411	first strand
Strand 2	A	414	424	anti-parallel
Strand 3	A	538	549	anti-parallel
Strand 4	A	501	509	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	439	443	anti-parallel
Strand 3	A	446	450	anti-parallel
Strand 4	A	534	535	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	218	227	parallel
Strand 3	B	240	249	anti-parallel
Strand 4	B	327	333	anti-parallel
Strand 5	B	304	312	anti-parallel
Strand 6	B	292	297	anti-parallel
Strand 7	B	274	278	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	106	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	517	519	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	411	first strand
Strand 2	B	414	424	anti-parallel
Strand 3	B	538	548	anti-parallel
Strand 4	B	501	509	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	478	first strand
Strand 2	B	439	443	anti-parallel
Strand 3	B	446	450	anti-parallel
Strand 4	B	534	535	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6C