Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X6D entry

There are 8 chains in PDB entry 5X6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ASN 237
B	ASN 2	ASN 237
C	G 1	T 29
D	A 2	C 29
G	ALA 3	ASN 237
H	ASN 2	ASN 237
L	A 2	C 29
K	G 1	T 29

There are 57 helices in PDB entry 5X6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	99	108	Right-handed alpha
Helix 3	AA3	A	109	136	Right-handed alpha
Helix 4	AA4	A	137	154	Right-handed alpha
Helix 5	AA5	A	170	178	Right-handed alpha
Helix 6	AA6	A	182	195	Right-handed alpha
Helix 7	AA7	A	210	218	Right-handed alpha
Helix 8	AA8	A	218	229	Right-handed alpha
Helix 9	AA9	A	229	235	Right-handed alpha
Helix 10	AB1	B	3	13	Right-handed alpha
Helix 11	AB2	B	99	108	Right-handed alpha
Helix 12	AB3	B	109	137	Right-handed alpha
Helix 13	AB4	B	137	154	Right-handed alpha
Helix 14	AB5	B	170	177	Right-handed alpha
Helix 15	AB6	B	182	191	Right-handed alpha
Helix 16	AB7	B	191	196	Right-handed alpha
Helix 17	AB8	B	210	218	Right-handed alpha
Helix 18	AB9	B	218	229	Right-handed alpha
Helix 19	AC1	B	229	237	Right-handed alpha
Helix 20	AC2	G	7	15	Right-handed alpha
Helix 21	AC3	G	101	106	Right-handed alpha
Helix 22	AC4	G	112	136	Right-handed alpha
Helix 23	AC5	G	137	154	Right-handed alpha
Helix 24	AC6	G	171	178	Right-handed alpha
Helix 25	AC7	G	182	192	Right-handed alpha
Helix 26	AC8	G	192	197	Right-handed alpha
Helix 27	AC9	G	210	216	Right-handed alpha
Helix 28	AD1	G	218	229	Right-handed alpha
Helix 29	AD2	G	229	234	Right-handed alpha
Helix 30	AD3	H	3	14	Right-handed alpha
Helix 31	AD4	H	98	100	Right-handed 310
Helix 32	AD5	H	101	109	Right-handed alpha
Helix 33	AD6	H	109	137	Right-handed alpha
Helix 34	AD7	H	137	154	Right-handed alpha
Helix 35	AD8	H	170	177	Right-handed alpha
Helix 36	AD9	H	182	196	Right-handed alpha
Helix 37	AE1	H	210	218	Right-handed alpha
Helix 38	AE2	H	218	228	Right-handed alpha
Helix 39	AE3	H	229	237	Right-handed alpha
Helix 40	AE4	M	4	15	Right-handed alpha
Helix 41	AE5	M	99	109	Right-handed alpha
Helix 42	AE6	M	109	135	Right-handed alpha
Helix 43	AE7	M	137	154	Right-handed alpha
Helix 44	AE8	M	171	176	Right-handed alpha
Helix 45	AE9	M	182	194	Right-handed alpha
Helix 46	AF1	M	210	214	Right-handed 310
Helix 47	AF2	M	218	228	Right-handed alpha
Helix 48	AF3	M	229	234	Right-handed alpha
Helix 49	AF4	N	3	9	Right-handed alpha
Helix 50	AF5	N	102	109	Right-handed alpha
Helix 51	AF6	N	109	136	Right-handed alpha
Helix 52	AF7	N	137	154	Right-handed alpha
Helix 53	AF8	N	170	177	Right-handed alpha
Helix 54	AF9	N	182	196	Right-handed alpha
Helix 55	AG1	N	210	218	Right-handed alpha
Helix 56	AG2	N	218	228	Right-handed alpha
Helix 57	AG3	N	229	234	Right-handed alpha

There are 17 sheets in PDB entry 5X6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	37	43	anti-parallel
Strand 4	A	67	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	84	87	anti-parallel
Strand 3	A	45	51	anti-parallel
Strand 4	A	57	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	205	208	anti-parallel
Strand 4	A	199	202	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	91	98	anti-parallel
Strand 3	B	37	43	anti-parallel
Strand 4	B	67	70	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	84	87	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	162	164	anti-parallel
Strand 3	B	205	208	anti-parallel
Strand 4	B	199	202	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	23	first strand
Strand 2	G	91	97	anti-parallel
Strand 3	G	38	43	anti-parallel
Strand 4	G	67	70	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	63	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	84	87	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	23	first strand
Strand 2	H	91	95	anti-parallel
Strand 3	H	38	43	anti-parallel
Strand 4	H	67	70	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	63	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	84	87	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	162	164	anti-parallel
Strand 3	H	205	208	anti-parallel
Strand 4	H	199	202	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	23	first strand
Strand 2	M	91	98	anti-parallel
Strand 3	M	37	43	anti-parallel
Strand 4	M	67	70	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	63	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	84	87	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	155	158	first strand
Strand 2	M	161	164	anti-parallel
Strand 3	M	205	208	anti-parallel
Strand 4	M	199	202	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	23	first strand
Strand 2	N	91	97	anti-parallel
Strand 3	N	38	43	anti-parallel
Strand 4	N	67	70	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	64	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	84	87	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	155	158	first strand
Strand 2	N	161	164	anti-parallel
Strand 3	N	205	208	anti-parallel
Strand 4	N	199	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6D