Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X6E entry

There are 12 chains in PDB entry 5X6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ASN 2	ASN 237
N	ASN 2	ASN 237
O	C 1	C 29
P	G 2	T 29
A	ASN 2	ASN 237
B	ASN 2	ASN 237
C	C 1	C 29
D	G 1	T 29
E	ASN 2	ASN 237
F	ASN 2	ASN 237
G	A 2	C 29
H	G 1	T 29

There are 56 helices in PDB entry 5X6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	3	15	Right-handed alpha
Helix 2	AA2	M	102	108	Right-handed alpha
Helix 3	AA3	M	109	137	Right-handed alpha
Helix 4	AA4	M	138	154	Right-handed alpha
Helix 5	AA5	M	170	178	Right-handed alpha
Helix 6	AA6	M	182	191	Right-handed alpha
Helix 7	AA7	M	211	218	Right-handed alpha
Helix 8	AA8	M	218	229	Right-handed alpha
Helix 9	AA9	M	229	235	Right-handed alpha
Helix 10	AB1	N	5	10	Right-handed alpha
Helix 11	AB2	N	99	103	Right-handed alpha
Helix 12	AB3	N	109	137	Right-handed alpha
Helix 13	AB4	N	137	154	Right-handed alpha
Helix 14	AB5	N	170	178	Right-handed alpha
Helix 15	AB6	N	182	194	Right-handed alpha
Helix 16	AB7	N	201	205	Right-handed 310
Helix 17	AB8	N	210	218	Right-handed alpha
Helix 18	AB9	N	218	228	Right-handed alpha
Helix 19	AC1	N	229	236	Right-handed alpha
Helix 20	AC2	A	4	8	Right-handed 310
Helix 21	AC3	A	101	109	Right-handed alpha
Helix 22	AC4	A	109	136	Right-handed alpha
Helix 23	AC5	A	137	154	Right-handed alpha
Helix 24	AC6	A	170	178	Right-handed alpha
Helix 25	AC7	A	182	196	Right-handed alpha
Helix 26	AC8	A	211	218	Right-handed alpha
Helix 27	AC9	A	218	228	Right-handed alpha
Helix 28	AD1	A	229	236	Right-handed alpha
Helix 29	AD2	B	5	12	Right-handed alpha
Helix 30	AD3	B	100	102	Right-handed 310
Helix 31	AD4	B	112	137	Right-handed alpha
Helix 32	AD5	B	137	154	Right-handed alpha
Helix 33	AD6	B	170	178	Right-handed alpha
Helix 34	AD7	B	182	188	Right-handed alpha
Helix 35	AD8	B	190	195	Right-handed alpha
Helix 36	AD9	B	211	218	Right-handed alpha
Helix 37	AE1	B	218	228	Right-handed alpha
Helix 38	AE2	B	229	236	Right-handed alpha
Helix 39	AE3	E	5	10	Right-handed alpha
Helix 40	AE4	E	99	109	Right-handed alpha
Helix 41	AE5	E	112	136	Right-handed alpha
Helix 42	AE6	E	138	154	Right-handed alpha
Helix 43	AE7	E	170	178	Right-handed alpha
Helix 44	AE8	E	182	194	Right-handed alpha
Helix 45	AE9	E	211	218	Right-handed alpha
Helix 46	AF1	E	223	228	Right-handed alpha
Helix 47	AF2	E	229	237	Right-handed alpha
Helix 48	AF3	F	3	15	Right-handed alpha
Helix 49	AF4	F	99	103	Right-handed alpha
Helix 50	AF5	F	112	136	Right-handed alpha
Helix 51	AF6	F	137	154	Right-handed alpha
Helix 52	AF7	F	170	178	Right-handed alpha
Helix 53	AF8	F	182	190	Right-handed alpha
Helix 54	AF9	F	211	218	Right-handed alpha
Helix 55	AG1	F	218	223	Right-handed alpha
Helix 56	AG2	F	223	228	Right-handed alpha

There are 19 sheets in PDB entry 5X6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	23	first strand
Strand 2	M	91	98	anti-parallel
Strand 3	M	37	43	anti-parallel
Strand 4	M	67	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	27	29	first strand
Strand 2	M	84	87	anti-parallel
Strand 3	M	45	51	anti-parallel
Strand 4	M	57	64	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	155	158	first strand
Strand 2	M	161	164	anti-parallel
Strand 3	M	205	208	anti-parallel
Strand 4	M	201	202	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	21	first strand
Strand 2	N	93	98	anti-parallel
Strand 3	N	37	43	anti-parallel
Strand 4	N	67	70	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	64	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	84	87	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	155	156	first strand
Strand 2	N	163	164	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	199	200	first strand
Strand 2	N	207	208	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	37	43	anti-parallel
Strand 3	A	93	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	64	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	84	87	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	161	162	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	94	98	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	64	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	84	87	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	207	208	anti-parallel
Strand 4	B	199	200	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	91	98	anti-parallel
Strand 3	E	37	43	anti-parallel
Strand 4	E	67	70	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	64	first strand
Strand 2	E	45	50	anti-parallel
Strand 3	E	84	87	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	158	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	E	206	208	anti-parallel
Strand 4	E	199	201	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	84	98	anti-parallel
Strand 3	F	37	51	anti-parallel
Strand 4	F	57	64	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	84	98	anti-parallel
Strand 3	F	37	51	anti-parallel
Strand 4	F	67	70	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	202	first strand
Strand 2	F	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6E