Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X6M entry

There are 8 chains in PDB entry 5X6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 13PRO 134
C
 A 1 A 22
D
 T 1 A 22
A
 SER 12SER 133
E
 PRO 13SER 133
G
 A 1 A 22
H
 T 1 A 22
F
 PRO 13SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5X6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 21Right-handed alpha
Helix 2
AA2
B
25 44Right-handed alpha
Helix 3
AA3
B
47 58Right-handed alpha
Helix 4
AA4
B
84 94Right-handed alpha
Helix 5
AA5
B
100 102Right-handed 310
Helix 6
AA6
A
13 20Right-handed alpha
Helix 7
AA7
A
25 44Right-handed alpha
Helix 8
AA8
A
45 58Right-handed alpha
Helix 9
AA9
A
84 94Right-handed alpha
Helix 10
AB1
A
124 126Right-handed 310
Helix 11
AB2
E
14 20Right-handed alpha
Helix 12
AB3
E
25 43Right-handed alpha
Helix 13
AB4
E
47 58Right-handed alpha
Helix 14
AB5
E
84 94Right-handed alpha
Helix 15
AB6
E
100 102Right-handed 310
Helix 16
AB7
E
113 117Right-handed 310
Helix 17
AB8
E
124 126Right-handed 310
Helix 18
AB9
F
14 20Right-handed alpha
Helix 19
AC1
F
25 45Right-handed alpha
Helix 20
AC2
F
47 58Right-handed alpha
Helix 21
AC3
F
84 94Right-handed alpha
Helix 22
AC4
F
100 102Right-handed 310
Helix 23
AC5
F
113 117Right-handed 310
Helix 24
AC6
F
124 126Right-handed 310
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There are 12 sheets in PDB entry 5X6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
121 122anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
81 83anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
128 130anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
81 83anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
128 130anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
67 69first strand
Strand 2
E
120 122anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
81 83anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 106first strand
Strand 2
E
128 130anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
67 69first strand
Strand 2
F
120 122anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 78first strand
Strand 2
F
81 83anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
104 106first strand
Strand 2
F
128 130anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il