Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X6R entry

There are 2 chains in PDB entry 5X6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 390
B
 GLU 3HIS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5X6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
55 66Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
109 122Right-handed alpha
Helix 5
AA5
A
172 180Right-handed alpha
Helix 6
AA6
A
249 256Right-handed alpha
Helix 7
AA7
A
258 270Right-handed alpha
Helix 8
AA8
A
271 274Right-handed 310
Helix 9
AA9
A
278 288Right-handed alpha
Helix 10
AB1
A
313 318Right-handed alpha
Helix 11
AB2
A
325 344Right-handed alpha
Helix 12
AB3
A
347 378Right-handed alpha
Helix 13
AB4
B
11 24Right-handed alpha
Helix 14
AB5
B
56 64Right-handed alpha
Helix 15
AB6
B
66 74Right-handed alpha
Helix 16
AB7
B
109 122Right-handed alpha
Helix 17
AB8
B
172 182Right-handed alpha
Helix 18
AB9
B
249 256Right-handed alpha
Helix 19
AC1
B
258 270Right-handed alpha
Helix 20
AC2
B
271 274Right-handed 310
Helix 21
AC3
B
278 288Right-handed alpha
Helix 22
AC4
B
313 318Right-handed alpha
Helix 23
AC5
B
325 344Right-handed alpha
Helix 24
AC6
B
347 379Right-handed alpha
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There are 9 sheets in PDB entry 5X6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
27 31parallel
Strand 3
A
4 8parallel
Strand 4
A
163 166parallel
Strand 5
A
309 311parallel
Strand 6
A
303 304anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
78 79anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
220 225parallel
Strand 4
A
230 235anti-parallel
Strand 5
A
241 248anti-parallel
Strand 6
A
193 200anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
157 161anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 300first strand
Strand 2
A
185 190anti-parallel
Strand 3
B
185 191anti-parallel
Strand 4
B
294 300anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
27 31parallel
Strand 3
B
4 8parallel
Strand 4
B
163 166parallel
Strand 5
B
309 311parallel
Strand 6
B
303 304anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
78 80anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
220 225parallel
Strand 4
B
230 235anti-parallel
Strand 5
B
241 248anti-parallel
Strand 6
B
193 200anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
159 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il