Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X6S entry

There are 2 chains in PDB entry 5X6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 275
B
 GLY 2ALA 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5X6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 50Right-handed alpha
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
90 107Right-handed alpha
Helix 4
AA4
A
119 132Right-handed alpha
Helix 5
AA5
A
133 136Right-handed 310
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
172 183Right-handed alpha
Helix 8
AA8
A
207 222Right-handed alpha
Helix 9
AA9
A
264 273Right-handed alpha
Helix 10
AB1
B
43 50Right-handed alpha
Helix 11
AB2
B
52 61Right-handed alpha
Helix 12
AB3
B
90 107Right-handed alpha
Helix 13
AB4
B
119 132Right-handed alpha
Helix 14
AB5
B
133 136Right-handed 310
Helix 15
AB6
B
161 166Right-handed alpha
Helix 16
AB7
B
172 182Right-handed alpha
Helix 17
AB8
B
183 185Right-handed 310
Helix 18
AB9
B
207 222Right-handed alpha
Helix 19
AC1
B
264 273Right-handed alpha
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There are 2 sheets in PDB entry 5X6S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
33 37parallel
Strand 5
A
113 118parallel
Strand 6
A
138 142parallel
Strand 7
A
193 199parallel
Strand 8
A
249 254parallel
Strand 9
A
240 246anti-parallel
Strand 10
A
230 232anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
63 68anti-parallel
Strand 4
B
33 37parallel
Strand 5
B
113 118parallel
Strand 6
B
138 142parallel
Strand 7
B
193 199parallel
Strand 8
B
249 254parallel
Strand 9
B
240 246anti-parallel
Strand 10
B
230 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il