Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X6V entry

There are 7 chains in PDB entry 5X6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 122
B
 MET 1SER 125
C
 MET 1SER 91
D
 ALA 4ARG 92
E
 ASP 49PRO 161
F
 LEU 187LYS 307
G
 GLN 238GLY 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5X6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
46 51Right-handed alpha
Helix 5
AA5
A
51 61Right-handed alpha
Helix 6
AA6
A
99 122Right-handed alpha
Helix 7
AA7
B
3 13Right-handed alpha
Helix 8
AA8
B
41 64Right-handed alpha
Helix 9
AA9
B
100 124Right-handed alpha
Helix 10
AB1
C
2 14Right-handed alpha
Helix 11
AB2
C
38 40Right-handed 310
Helix 12
AB3
C
41 54Right-handed alpha
Helix 13
AB4
D
8 12Right-handed 310
Helix 14
AB5
D
36 52Right-handed alpha
Helix 15
AB6
E
50 65Right-handed alpha
Helix 16
AB7
E
77 96Right-handed alpha
Helix 17
AB8
E
114 121Right-handed alpha
Helix 18
AB9
E
125 143Right-handed alpha
Helix 19
AC1
E
144 146Right-handed 310
Helix 20
AC2
F
188 199Right-handed alpha
Helix 21
AC3
F
226 244Right-handed alpha
Helix 22
AC4
F
282 305Right-handed alpha
Helix 23
AC5
G
239 254Right-handed alpha
Helix 24
AC6
G
277 299Right-handed alpha
Helix 25
AC7
G
343 346Right-handed 310
Helix 26
AC8
G
347 369Right-handed alpha
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There are 3 sheets in PDB entry 5X6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
78 85anti-parallel
Strand 5
A
68 75anti-parallel
Strand 6
B
69 76anti-parallel
Strand 7
B
79 86anti-parallel
Strand 8
B
89 95anti-parallel
Strand 9
B
19 25anti-parallel
Strand 10
B
31 36anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 35first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
82 89anti-parallel
Strand 4
C
72 79anti-parallel
Strand 5
C
64 68anti-parallel
Strand 6
D
65 69anti-parallel
Strand 7
D
73 80anti-parallel
Strand 8
D
83 90anti-parallel
Strand 9
D
15 22anti-parallel
Strand 10
D
25 31anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
213 218first strand
Strand 2
F
202 207anti-parallel
Strand 3
F
270 276anti-parallel
Strand 4
F
259 264anti-parallel
Strand 5
F
249 256anti-parallel
Strand 6
G
314 319anti-parallel
Strand 7
G
323 329anti-parallel
Strand 8
G
334 341anti-parallel
Strand 9
G
257 262anti-parallel
Strand 10
G
268 271anti-parallel
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