Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X6Y entry

There are 4 chains in PDB entry 5X6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	ILE 801
B	PRO 4	ILE 801
C	CYS 7	ILE 801
D	PRO 4	ILE 801

There are133 helices in PDB entry 5X6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	28	Right-handed alpha
Helix 2	AA2	A	40	56	Right-handed alpha
Helix 3	AA3	A	67	81	Right-handed alpha
Helix 4	AA4	A	101	112	Right-handed alpha
Helix 5	AA5	A	126	140	Right-handed alpha
Helix 6	AA6	A	157	167	Right-handed 310
Helix 7	AA7	A	173	197	Right-handed alpha
Helix 8	AA8	A	200	203	Right-handed 310
Helix 9	AA9	A	214	222	Right-handed alpha
Helix 10	AB1	A	266	278	Right-handed alpha
Helix 11	AB2	A	291	297	Right-handed 310
Helix 12	AB3	A	312	324	Right-handed alpha
Helix 13	AB4	A	345	350	Right-handed 310
Helix 14	AB5	A	365	381	Right-handed alpha
Helix 15	AB6	A	436	449	Right-handed alpha
Helix 16	AB7	A	451	457	Right-handed alpha
Helix 17	AB8	A	458	464	Right-handed alpha
Helix 18	AB9	A	471	475	Right-handed 310
Helix 19	AC1	A	487	491	Right-handed 310
Helix 20	AC2	A	495	509	Right-handed alpha
Helix 21	AC3	A	519	529	Right-handed alpha
Helix 22	AC4	A	560	567	Right-handed alpha
Helix 23	AC5	A	573	581	Right-handed alpha
Helix 24	AC6	A	594	599	Right-handed alpha
Helix 25	AC7	A	606	613	Right-handed alpha
Helix 26	AC8	A	617	621	Right-handed 310
Helix 27	AC9	A	622	627	Right-handed alpha
Helix 28	AD1	A	627	638	Right-handed alpha
Helix 29	AD2	A	640	659	Right-handed alpha
Helix 30	AD3	A	662	664	Right-handed 310
Helix 31	AD4	A	702	712	Right-handed alpha
Helix 32	AD5	A	718	729	Right-handed alpha
Helix 33	AD6	A	740	745	Right-handed 310
Helix 34	AD7	A	760	779	Right-handed alpha
Helix 35	AD8	A	784	799	Right-handed alpha
Helix 36	AD9	B	16	28	Right-handed alpha
Helix 37	AE1	B	40	56	Right-handed alpha
Helix 38	AE2	B	67	81	Right-handed alpha
Helix 39	AE3	B	101	112	Right-handed alpha
Helix 40	AE4	B	126	140	Right-handed alpha
Helix 41	AE5	B	157	163	Right-handed 310
Helix 42	AE6	B	173	197	Right-handed alpha
Helix 43	AE7	B	200	203	Right-handed 310
Helix 44	AE8	B	214	222	Right-handed alpha
Helix 45	AE9	B	270	278	Right-handed alpha
Helix 46	AF1	B	291	297	Right-handed 310
Helix 47	AF2	B	312	324	Right-handed alpha
Helix 48	AF3	B	452	457	Right-handed alpha
Helix 49	AF4	B	458	464	Right-handed alpha
Helix 50	AF5	B	471	475	Right-handed 310
Helix 51	AF6	B	495	509	Right-handed alpha
Helix 52	AF7	B	519	529	Right-handed alpha
Helix 53	AF8	B	560	567	Right-handed alpha
Helix 54	AF9	B	573	581	Right-handed alpha
Helix 55	AG1	B	594	599	Right-handed alpha
Helix 56	AG2	B	606	613	Right-handed alpha
Helix 57	AG3	B	617	621	Right-handed 310
Helix 58	AG4	B	622	627	Right-handed alpha
Helix 59	AG5	B	627	638	Right-handed alpha
Helix 60	AG6	B	640	659	Right-handed alpha
Helix 61	AG7	B	662	664	Right-handed 310
Helix 62	AG8	B	702	712	Right-handed alpha
Helix 63	AG9	B	718	729	Right-handed alpha
Helix 64	AH1	B	740	745	Right-handed 310
Helix 65	AH2	B	760	779	Right-handed alpha
Helix 66	AH3	B	784	799	Right-handed alpha
Helix 67	AH4	C	16	28	Right-handed alpha
Helix 68	AH5	C	40	56	Right-handed alpha
Helix 69	AH6	C	67	82	Right-handed alpha
Helix 70	AH7	C	101	112	Right-handed alpha
Helix 71	AH8	C	126	140	Right-handed alpha
Helix 72	AH9	C	157	167	Right-handed 310
Helix 73	AI1	C	173	197	Right-handed alpha
Helix 74	AI2	C	200	203	Right-handed 310
Helix 75	AI3	C	214	222	Right-handed alpha
Helix 76	AI4	C	266	278	Right-handed alpha
Helix 77	AI5	C	291	297	Right-handed 310
Helix 78	AI6	C	312	324	Right-handed alpha
Helix 79	AI7	C	342	350	Right-handed 310
Helix 80	AI8	C	365	381	Right-handed alpha
Helix 81	AI9	C	436	448	Right-handed alpha
Helix 82	AJ1	C	451	457	Right-handed alpha
Helix 83	AJ2	C	458	464	Right-handed alpha
Helix 84	AJ3	C	471	475	Right-handed 310
Helix 85	AJ4	C	495	509	Right-handed alpha
Helix 86	AJ5	C	519	529	Right-handed alpha
Helix 87	AJ6	C	560	567	Right-handed alpha
Helix 88	AJ7	C	573	581	Right-handed alpha
Helix 89	AJ8	C	582	585	Right-handed 310
Helix 90	AJ9	C	594	599	Right-handed alpha
Helix 91	AK1	C	606	613	Right-handed alpha
Helix 92	AK2	C	617	621	Right-handed 310
Helix 93	AK3	C	627	638	Right-handed alpha
Helix 94	AK4	C	640	659	Right-handed alpha
Helix 95	AK5	C	662	664	Right-handed 310
Helix 96	AK6	C	702	712	Right-handed alpha
Helix 97	AK7	C	718	729	Right-handed alpha
Helix 98	AK8	C	740	745	Right-handed 310
Helix 99	AK9	C	760	779	Right-handed alpha
Helix 100	AL1	C	784	799	Right-handed alpha
Helix 101	AL2	D	16	28	Right-handed alpha
Helix 102	AL3	D	40	56	Right-handed alpha
Helix 103	AL4	D	67	81	Right-handed alpha
Helix 104	AL5	D	101	112	Right-handed alpha
Helix 105	AL6	D	126	140	Right-handed alpha
Helix 106	AL7	D	157	161	Right-handed 310
Helix 107	AL8	D	175	197	Right-handed alpha
Helix 108	AL9	D	200	203	Right-handed 310
Helix 109	AM1	D	214	222	Right-handed alpha
Helix 110	AM2	D	270	280	Right-handed alpha
Helix 111	AM3	D	291	297	Right-handed 310
Helix 112	AM4	D	312	323	Right-handed alpha
Helix 113	AM5	D	342	350	Right-handed 310
Helix 114	AM6	D	375	381	Right-handed alpha
Helix 115	AM7	D	436	438	Right-handed 310
Helix 116	AM8	D	439	449	Right-handed alpha
Helix 117	AM9	D	458	464	Right-handed alpha
Helix 118	AN1	D	471	475	Right-handed 310
Helix 119	AN2	D	495	509	Right-handed alpha
Helix 120	AN3	D	519	529	Right-handed alpha
Helix 121	AN4	D	560	567	Right-handed alpha
Helix 122	AN5	D	573	581	Right-handed alpha
Helix 123	AN6	D	594	599	Right-handed alpha
Helix 124	AN7	D	606	613	Right-handed alpha
Helix 125	AN8	D	617	621	Right-handed 310
Helix 126	AN9	D	627	638	Right-handed alpha
Helix 127	AO1	D	640	659	Right-handed alpha
Helix 128	AO2	D	662	664	Right-handed 310
Helix 129	AO3	D	702	712	Right-handed alpha
Helix 130	AO4	D	718	729	Right-handed alpha
Helix 131	AO5	D	740	745	Right-handed 310
Helix 132	AO6	D	760	779	Right-handed alpha
Helix 133	AO7	D	784	799	Right-handed alpha

There are 34 sheets in PDB entry 5X6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	B	170	171	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	62	first strand
Strand 2	A	89	93	parallel
Strand 3	A	33	37	parallel
Strand 4	A	115	118	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	B	7	8	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	469	first strand
Strand 2	A	225	230	parallel
Strand 3	A	205	209	parallel
Strand 4	A	482	485	parallel
Strand 5	A	512	518	parallel
Strand 6	A	600	605	anti-parallel
Strand 7	A	569	572	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	401	410	parallel
Strand 3	A	421	425	anti-parallel
Strand 4	A	387	395	anti-parallel
Strand 5	A	353	358	parallel
Strand 6	A	282	286	parallel
Strand 7	A	303	307	parallel
Strand 8	A	326	330	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	401	410	parallel
Strand 3	A	430	435	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	543	546	anti-parallel
Strand 3	A	555	557	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	676	678	anti-parallel
Strand 3	A	698	699	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	691	693	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	734	first strand
Strand 2	A	754	755	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	89	93	parallel
Strand 3	B	33	37	parallel
Strand 4	B	115	118	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	469	first strand
Strand 2	B	225	230	parallel
Strand 3	B	205	209	parallel
Strand 4	B	482	485	parallel
Strand 5	B	512	518	parallel
Strand 6	B	600	605	anti-parallel
Strand 7	B	569	571	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	406	410	parallel
Strand 3	B	422	425	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	303	306	parallel
Strand 3	B	282	284	parallel
Strand 4	B	353	357	parallel
Strand 5	B	387	392	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	540	first strand
Strand 2	B	543	546	anti-parallel
Strand 3	B	555	557	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	676	678	anti-parallel
Strand 3	B	697	699	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	691	693	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	734	first strand
Strand 2	B	754	755	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	62	first strand
Strand 2	C	89	93	parallel
Strand 3	C	33	37	parallel
Strand 4	C	115	118	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	D	7	8	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	469	first strand
Strand 2	C	225	230	parallel
Strand 3	C	205	209	parallel
Strand 4	C	482	485	parallel
Strand 5	C	512	518	parallel
Strand 6	C	600	605	anti-parallel
Strand 7	C	569	572	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	406	411	parallel
Strand 3	C	421	425	anti-parallel
Strand 4	C	387	395	anti-parallel
Strand 5	C	353	358	parallel
Strand 6	C	282	286	parallel
Strand 7	C	303	307	parallel
Strand 8	C	326	330	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	403	first strand
Strand 2	C	433	435	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	540	first strand
Strand 2	C	543	546	anti-parallel
Strand 3	C	555	557	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	666	668	first strand
Strand 2	C	676	678	anti-parallel
Strand 3	C	697	699	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	684	first strand
Strand 2	C	691	693	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	62	first strand
Strand 2	D	89	93	parallel
Strand 3	D	33	38	parallel
Strand 4	D	115	119	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	469	first strand
Strand 2	D	225	230	parallel
Strand 3	D	205	209	parallel
Strand 4	D	482	485	parallel
Strand 5	D	512	518	parallel
Strand 6	D	600	605	anti-parallel
Strand 7	D	569	572	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	406	410	parallel
Strand 3	D	422	425	anti-parallel
Strand 4	D	387	393	anti-parallel
Strand 5	D	353	358	parallel
Strand 6	D	282	286	parallel
Strand 7	D	303	307	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	403	first strand
Strand 2	D	433	435	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	540	first strand
Strand 2	D	543	545	anti-parallel
Strand 3	D	556	557	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	666	668	first strand
Strand 2	D	676	678	anti-parallel
Strand 3	D	698	699	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	684	first strand
Strand 2	D	691	693	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	733	734	first strand
Strand 2	D	754	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6Y