Analysis of interatomic Contacts of Structural Units in PDB entry:
5X71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X71 entry

There are 2 chains in PDB entry 5X71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	ILE 801
B	ASP 5	ILE 801

There are 73 helices in PDB entry 5X71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	28	30	Right-handed 310
Helix 3	AA3	A	40	56	Right-handed alpha
Helix 4	AA4	A	67	80	Right-handed alpha
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	126	140	Right-handed alpha
Helix 7	AA7	A	157	163	Right-handed 310
Helix 8	AA8	A	173	197	Right-handed alpha
Helix 9	AA9	A	200	203	Right-handed 310
Helix 10	AB1	A	214	221	Right-handed alpha
Helix 11	AB2	A	266	278	Right-handed alpha
Helix 12	AB3	A	291	297	Right-handed 310
Helix 13	AB4	A	312	324	Right-handed alpha
Helix 14	AB5	A	342	350	Right-handed 310
Helix 15	AB6	A	365	381	Right-handed alpha
Helix 16	AB7	A	436	449	Right-handed alpha
Helix 17	AB8	A	451	457	Right-handed alpha
Helix 18	AB9	A	458	464	Right-handed alpha
Helix 19	AC1	A	471	475	Right-handed 310
Helix 20	AC2	A	486	491	Right-handed alpha
Helix 21	AC3	A	495	509	Right-handed alpha
Helix 22	AC4	A	519	529	Right-handed alpha
Helix 23	AC5	A	560	566	Right-handed alpha
Helix 24	AC6	A	573	581	Right-handed alpha
Helix 25	AC7	A	594	599	Right-handed alpha
Helix 26	AC8	A	606	613	Right-handed alpha
Helix 27	AC9	A	617	621	Right-handed 310
Helix 28	AD1	A	622	627	Right-handed alpha
Helix 29	AD2	A	627	638	Right-handed alpha
Helix 30	AD3	A	640	659	Right-handed alpha
Helix 31	AD4	A	662	664	Right-handed 310
Helix 32	AD5	A	702	712	Right-handed alpha
Helix 33	AD6	A	718	729	Right-handed alpha
Helix 34	AD7	A	740	745	Right-handed 310
Helix 35	AD8	A	760	779	Right-handed alpha
Helix 36	AD9	A	784	799	Right-handed alpha
Helix 37	AE1	B	16	27	Right-handed alpha
Helix 38	AE2	B	28	30	Right-handed 310
Helix 39	AE3	B	40	56	Right-handed alpha
Helix 40	AE4	B	67	81	Right-handed alpha
Helix 41	AE5	B	101	112	Right-handed alpha
Helix 42	AE6	B	126	140	Right-handed alpha
Helix 43	AE7	B	157	167	Right-handed 310
Helix 44	AE8	B	173	197	Right-handed alpha
Helix 45	AE9	B	200	203	Right-handed 310
Helix 46	AF1	B	214	221	Right-handed alpha
Helix 47	AF2	B	266	278	Right-handed alpha
Helix 48	AF3	B	291	297	Right-handed 310
Helix 49	AF4	B	312	324	Right-handed alpha
Helix 50	AF5	B	345	350	Right-handed 310
Helix 51	AF6	B	365	381	Right-handed alpha
Helix 52	AF7	B	436	450	Right-handed alpha
Helix 53	AF8	B	451	457	Right-handed alpha
Helix 54	AF9	B	458	464	Right-handed alpha
Helix 55	AG1	B	471	475	Right-handed 310
Helix 56	AG2	B	477	480	Right-handed 310
Helix 57	AG3	B	486	491	Right-handed alpha
Helix 58	AG4	B	495	509	Right-handed alpha
Helix 59	AG5	B	519	529	Right-handed alpha
Helix 60	AG6	B	560	567	Right-handed alpha
Helix 61	AG7	B	573	581	Right-handed alpha
Helix 62	AG8	B	594	599	Right-handed alpha
Helix 63	AG9	B	606	613	Right-handed alpha
Helix 64	AH1	B	617	621	Right-handed 310
Helix 65	AH2	B	627	637	Right-handed alpha
Helix 66	AH3	B	640	659	Right-handed alpha
Helix 67	AH4	B	662	664	Right-handed 310
Helix 68	AH5	B	702	712	Right-handed alpha
Helix 69	AH6	B	718	729	Right-handed alpha
Helix 70	AH7	B	740	745	Right-handed 310
Helix 71	AH8	B	760	770	Right-handed alpha
Helix 72	AH9	B	770	779	Right-handed alpha
Helix 73	AI1	B	784	799	Right-handed alpha

There are 16 sheets in PDB entry 5X71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	B	170	171	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	62	first strand
Strand 2	A	89	93	parallel
Strand 3	A	33	38	parallel
Strand 4	A	115	119	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	B	7	8	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	469	first strand
Strand 2	A	225	230	parallel
Strand 3	A	205	209	parallel
Strand 4	A	482	485	parallel
Strand 5	A	512	518	parallel
Strand 6	A	600	605	anti-parallel
Strand 7	A	569	572	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	406	410	parallel
Strand 3	A	421	425	anti-parallel
Strand 4	A	387	395	anti-parallel
Strand 5	A	353	358	parallel
Strand 6	A	282	286	parallel
Strand 7	A	303	307	parallel
Strand 8	A	326	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	433	435	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	A	553	557	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	676	678	anti-parallel
Strand 3	A	698	699	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	691	693	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	89	93	parallel
Strand 3	B	33	38	parallel
Strand 4	B	115	119	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	469	first strand
Strand 2	B	225	230	parallel
Strand 3	B	205	209	parallel
Strand 4	B	482	485	parallel
Strand 5	B	512	518	parallel
Strand 6	B	600	605	anti-parallel
Strand 7	B	569	571	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	406	410	parallel
Strand 3	B	421	425	anti-parallel
Strand 4	B	387	395	anti-parallel
Strand 5	B	353	358	parallel
Strand 6	B	282	286	parallel
Strand 7	B	303	307	parallel
Strand 8	B	326	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	433	435	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	540	first strand
Strand 2	B	543	547	anti-parallel
Strand 3	B	553	557	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	676	678	anti-parallel
Strand 3	B	698	699	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	691	693	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X71

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X71