Analysis of interatomic Contacts of Structural Units in PDB entry:
5X7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X7M entry

There are 2 chains in PDB entry 5X7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	ALA 445
B	THR 3	ALA 445

There are 36 helices in PDB entry 5X7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	34	42	Right-handed alpha
Helix 3	AA3	A	50	65	Right-handed alpha
Helix 4	AA4	A	66	69	Right-handed 310
Helix 5	AA5	A	75	77	Right-handed 310
Helix 6	AA6	A	79	90	Right-handed alpha
Helix 7	AA7	A	97	107	Right-handed alpha
Helix 8	AA8	A	110	112	Right-handed 310
Helix 9	AA9	A	122	133	Right-handed alpha
Helix 10	AB1	A	141	155	Right-handed alpha
Helix 11	AB2	A	193	205	Right-handed alpha
Helix 12	AB3	A	224	246	Right-handed alpha
Helix 13	AB4	A	270	290	Right-handed alpha
Helix 14	AB5	A	301	306	Right-handed alpha
Helix 15	AB6	A	342	348	Right-handed alpha
Helix 16	AB7	A	405	409	Right-handed 310
Helix 17	AB8	A	411	415	Right-handed 310
Helix 18	AB9	A	436	443	Right-handed alpha
Helix 19	AC1	B	4	9	Right-handed alpha
Helix 20	AC2	B	34	42	Right-handed alpha
Helix 21	AC3	B	50	64	Right-handed alpha
Helix 22	AC4	B	66	69	Right-handed 310
Helix 23	AC5	B	75	77	Right-handed 310
Helix 24	AC6	B	79	89	Right-handed alpha
Helix 25	AC7	B	97	107	Right-handed alpha
Helix 26	AC8	B	110	112	Right-handed 310
Helix 27	AC9	B	122	132	Right-handed alpha
Helix 28	AD1	B	141	155	Right-handed alpha
Helix 29	AD2	B	193	205	Right-handed alpha
Helix 30	AD3	B	224	246	Right-handed alpha
Helix 31	AD4	B	270	290	Right-handed alpha
Helix 32	AD5	B	301	306	Right-handed alpha
Helix 33	AD6	B	342	348	Right-handed alpha
Helix 34	AD7	B	405	409	Right-handed 310
Helix 35	AD8	B	411	415	Right-handed 310
Helix 36	AD9	B	436	442	Right-handed alpha

There are 12 sheets in PDB entry 5X7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	27	29	anti-parallel
Strand 3	A	32	33	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	328	334	anti-parallel
Strand 5	A	364	370	parallel
Strand 6	A	379	387	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	45	49	anti-parallel
Strand 5	A	419	424	parallel
Strand 6	A	427	432	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	92	95	parallel
Strand 3	A	114	116	parallel
Strand 4	A	136	139	parallel
Strand 5	A	159	166	parallel
Strand 6	A	188	189	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	92	95	parallel
Strand 3	A	114	116	parallel
Strand 4	A	136	139	parallel
Strand 5	A	159	166	parallel
Strand 6	A	208	214	parallel
Strand 7	A	251	253	parallel
Strand 8	A	295	297	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	176	178	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	27	29	anti-parallel
Strand 3	B	32	33	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	395	398	anti-parallel
Strand 3	B	309	324	anti-parallel
Strand 4	B	327	334	anti-parallel
Strand 5	B	364	370	parallel
Strand 6	B	379	387	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	395	398	anti-parallel
Strand 3	B	309	324	anti-parallel
Strand 4	B	45	49	anti-parallel
Strand 5	B	419	424	parallel
Strand 6	B	427	432	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	92	95	parallel
Strand 3	B	114	116	parallel
Strand 4	B	136	139	parallel
Strand 5	B	159	166	parallel
Strand 6	B	188	189	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	92	95	parallel
Strand 3	B	114	116	parallel
Strand 4	B	136	139	parallel
Strand 5	B	159	166	parallel
Strand 6	B	208	214	parallel
Strand 7	B	251	253	parallel
Strand 8	B	295	297	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	176	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X7M