Analysis of interatomic Contacts of Structural Units in PDB entry:
5X88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X88 entry

There is 1 chain in PDB entry 5X88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13SER 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5X88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
72 78Right-handed 310
Helix 4
AA4
A
83 101Right-handed alpha
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
126 132Right-handed alpha
Helix 7
AA7
A
155 157Right-handed 310
Helix 8
AA8
A
167 172Right-handed 310
Helix 9
AA9
A
177 185Right-handed 310
Helix 10
AB1
A
186 196Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5X88.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
26 31parallel
Strand 3
A
105 111parallel
Strand 4
A
133 139parallel
Strand 5
A
159 162parallel
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