Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X8F entry

There are 3 chains in PDB entry 5X8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	LEU 485
B	LEU 2	LEU 486
C	LEU 2	LYS 345

There are 72 helices in PDB entry 5X8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	16	Right-handed alpha
Helix 2	AA2	A	31	48	Right-handed alpha
Helix 3	AA3	A	63	77	Right-handed alpha
Helix 4	AA4	A	88	99	Right-handed alpha
Helix 5	AA5	A	111	116	Right-handed 310
Helix 6	AA6	A	124	128	Right-handed alpha
Helix 7	AA7	A	166	181	Right-handed alpha
Helix 8	AA8	A	196	210	Right-handed alpha
Helix 9	AA9	A	220	232	Right-handed alpha
Helix 10	AB1	A	239	250	Right-handed alpha
Helix 11	AB2	A	268	278	Right-handed alpha
Helix 12	AB3	A	289	292	Right-handed 310
Helix 13	AB4	A	299	303	Right-handed 310
Helix 14	AB5	A	350	357	Right-handed alpha
Helix 15	AB6	A	395	406	Right-handed alpha
Helix 16	AB7	A	437	447	Right-handed alpha
Helix 17	AB8	A	450	454	Right-handed 310
Helix 18	AB9	A	473	477	Right-handed 310
Helix 19	AC1	B	7	16	Right-handed alpha
Helix 20	AC2	B	31	48	Right-handed alpha
Helix 21	AC3	B	63	77	Right-handed alpha
Helix 22	AC4	B	88	99	Right-handed alpha
Helix 23	AC5	B	111	116	Right-handed 310
Helix 24	AC6	B	124	128	Right-handed alpha
Helix 25	AC7	B	166	181	Right-handed alpha
Helix 26	AC8	B	196	210	Right-handed alpha
Helix 27	AC9	B	220	232	Right-handed alpha
Helix 28	AD1	B	239	250	Right-handed alpha
Helix 29	AD2	B	268	278	Right-handed alpha
Helix 30	AD3	B	289	292	Right-handed 310
Helix 31	AD4	B	299	303	Right-handed 310
Helix 32	AD5	B	350	357	Right-handed alpha
Helix 33	AD6	B	395	406	Right-handed alpha
Helix 34	AD7	B	437	447	Right-handed alpha
Helix 35	AD8	B	450	454	Right-handed 310
Helix 36	AD9	B	473	480	Right-handed 310
Helix 37	AE1	C	7	16	Right-handed alpha
Helix 38	AE2	C	31	48	Right-handed alpha
Helix 39	AE3	C	63	77	Right-handed alpha
Helix 40	AE4	C	88	99	Right-handed alpha
Helix 41	AE5	C	111	116	Right-handed 310
Helix 42	AE6	C	124	128	Right-handed alpha
Helix 43	AE7	C	166	181	Right-handed alpha
Helix 44	AE8	C	196	210	Right-handed alpha
Helix 45	AE9	C	220	232	Right-handed alpha
Helix 46	AF1	C	239	250	Right-handed alpha
Helix 47	AF2	C	268	279	Right-handed alpha
Helix 48	AF3	C	289	292	Right-handed 310
Helix 49	AF4	C	299	303	Right-handed 310
Helix 50	AF5	C	350	357	Right-handed alpha
Helix 51	AF6	C	395	406	Right-handed alpha
Helix 52	AF7	C	437	447	Right-handed alpha
Helix 53	AF8	C	450	454	Right-handed 310
Helix 54	AF9	C	473	480	Right-handed 310
Helix 55	AG1	D	7	16	Right-handed alpha
Helix 56	AG2	D	31	47	Right-handed alpha
Helix 57	AG3	D	63	77	Right-handed alpha
Helix 58	AG4	D	88	99	Right-handed alpha
Helix 59	AG5	D	111	116	Right-handed 310
Helix 60	AG6	D	124	128	Right-handed alpha
Helix 61	AG7	D	166	181	Right-handed alpha
Helix 62	AG8	D	196	210	Right-handed alpha
Helix 63	AG9	D	220	232	Right-handed alpha
Helix 64	AH1	D	239	250	Right-handed alpha
Helix 65	AH2	D	268	279	Right-handed alpha
Helix 66	AH3	D	289	292	Right-handed 310
Helix 67	AH4	D	299	303	Right-handed 310
Helix 68	AH5	D	350	357	Right-handed alpha
Helix 69	AH6	D	395	406	Right-handed alpha
Helix 70	AH7	D	437	447	Right-handed alpha
Helix 71	AH8	D	450	454	Right-handed 310
Helix 72	AH9	D	473	477	Right-handed 310

There are 27 sheets in PDB entry 5X8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	140	142	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	A	212	215	parallel
Strand 4	A	187	190	parallel
Strand 5	A	235	238	parallel
Strand 6	A	259	262	parallel
Strand 7	A	282	288	parallel
Strand 8	A	293	298	anti-parallel
Strand 9	A	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	103	106	parallel
Strand 3	A	55	58	parallel
Strand 4	A	79	82	parallel
Strand 5	A	146	152	parallel
Strand 6	A	160	165	anti-parallel
Strand 7	A	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	318	323	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	362	371	anti-parallel
Strand 5	A	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	318	323	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	362	371	anti-parallel
Strand 5	A	377	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	392	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	419	first strand
Strand 2	A	423	432	anti-parallel
Strand 3	A	457	460	parallel
Strand 4	A	482	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	140	142	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	B	212	215	parallel
Strand 4	B	187	190	parallel
Strand 5	B	235	238	parallel
Strand 6	B	259	262	parallel
Strand 7	B	282	288	parallel
Strand 8	B	293	298	anti-parallel
Strand 9	B	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	103	106	parallel
Strand 3	B	55	58	parallel
Strand 4	B	79	82	parallel
Strand 5	B	146	152	parallel
Strand 6	B	160	165	anti-parallel
Strand 7	B	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	318	323	anti-parallel
Strand 3	B	334	339	anti-parallel
Strand 4	B	362	371	anti-parallel
Strand 5	B	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	318	323	anti-parallel
Strand 3	B	334	339	anti-parallel
Strand 4	B	362	371	anti-parallel
Strand 5	B	377	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	392	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	419	first strand
Strand 2	B	423	432	anti-parallel
Strand 3	B	457	460	parallel
Strand 4	B	483	484	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	140	142	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	212	215	parallel
Strand 4	C	187	190	parallel
Strand 5	C	235	238	parallel
Strand 6	C	259	262	parallel
Strand 7	C	282	288	parallel
Strand 8	C	293	298	anti-parallel
Strand 9	C	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	103	106	parallel
Strand 3	C	55	58	parallel
Strand 4	C	79	82	parallel
Strand 5	C	146	152	parallel
Strand 6	C	160	165	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	327	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	334	339	anti-parallel
Strand 4	C	362	371	anti-parallel
Strand 5	C	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	327	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	334	339	anti-parallel
Strand 4	C	362	371	anti-parallel
Strand 5	C	377	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	389	first strand
Strand 2	C	392	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	419	first strand
Strand 2	C	423	432	anti-parallel
Strand 3	C	457	460	parallel
Strand 4	C	483	484	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	140	142	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	212	215	parallel
Strand 4	D	187	190	parallel
Strand 5	D	235	238	parallel
Strand 6	D	259	262	parallel
Strand 7	D	282	288	parallel
Strand 8	D	293	298	anti-parallel
Strand 9	D	309	313	anti-parallel
Strand 10	D	377	380	anti-parallel
Strand 11	D	362	371	anti-parallel
Strand 12	D	334	339	anti-parallel
Strand 13	D	318	323	anti-parallel
Strand 14	D	326	327	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	212	215	parallel
Strand 4	D	187	190	parallel
Strand 5	D	235	238	parallel
Strand 6	D	259	262	parallel
Strand 7	D	282	288	parallel
Strand 8	D	293	298	anti-parallel
Strand 9	D	309	313	anti-parallel
Strand 10	D	377	380	anti-parallel
Strand 11	D	362	371	anti-parallel
Strand 12	D	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	103	106	parallel
Strand 3	D	55	58	parallel
Strand 4	D	79	82	parallel
Strand 5	D	146	152	parallel
Strand 6	D	160	165	anti-parallel
Strand 7	D	347	348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	389	first strand
Strand 2	D	392	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	419	first strand
Strand 2	D	423	432	anti-parallel
Strand 3	D	457	460	parallel
Strand 4	D	483	484	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8F