Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X8I entry

There are 2 chains in PDB entry 5X8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 155LYS 481
A
 GLY 154LYS 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5X8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
196 217Right-handed alpha
Helix 2
AA2
B
247 255Right-handed alpha
Helix 3
AA3
B
261 282Right-handed alpha
Helix 4
AA4
B
290 292Right-handed 310
Helix 5
AA5
B
342 346Right-handed 310
Helix 6
AA6
B
347 352Right-handed alpha
Helix 7
AA7
B
358 375Right-handed alpha
Helix 8
AA8
B
383 396Right-handed alpha
Helix 9
AA9
B
399 406Right-handed alpha
Helix 10
AB1
B
408 410Right-handed 310
Helix 11
AB2
B
423 433Right-handed alpha
Helix 12
AB3
B
435 440Right-handed 310
Helix 13
AB4
B
444 458Right-handed alpha
Helix 14
AB5
B
467 472Right-handed alpha
Helix 15
AB6
B
473 481Right-handed 310
Helix 16
AB7
A
196 217Right-handed alpha
Helix 17
AB8
A
247 255Right-handed alpha
Helix 18
AB9
A
261 282Right-handed alpha
Helix 19
AC1
A
290 292Right-handed 310
Helix 20
AC2
A
342 346Right-handed 310
Helix 21
AC3
A
347 352Right-handed alpha
Helix 22
AC4
A
358 375Right-handed alpha
Helix 23
AC5
A
383 396Right-handed alpha
Helix 24
AC6
A
399 406Right-handed alpha
Helix 25
AC7
A
408 410Right-handed 310
Helix 26
AC8
A
423 433Right-handed alpha
Helix 27
AC9
A
435 440Right-handed 310
Helix 28
AD1
A
444 458Right-handed alpha
Helix 29
AD2
A
467 472Right-handed alpha
Helix 30
AD3
A
473 481Right-handed 310
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There are 10 sheets in PDB entry 5X8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
161 170anti-parallel
Strand 3
B
173 180anti-parallel
Strand 4
B
188 193anti-parallel
Strand 5
B
236 242anti-parallel
Strand 6
B
227 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
330 331anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
321 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 306first strand
Strand 2
B
311 316anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 413first strand
Strand 2
B
416 417anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
173 180anti-parallel
Strand 4
A
188 193anti-parallel
Strand 5
A
236 242anti-parallel
Strand 6
A
227 233anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
330 331anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
321 323anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 306first strand
Strand 2
A
311 316anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
416 417anti-parallel
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