Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X8T entry

There are 32 chains in PDB entry 5X8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ALA 2	PHE 47
2	VAL 9	THR 59
3	ALA 91	ALA 147
4	GLY 89	ARG 157
5	MET 1	GLY 37
6	SER 94	VAL 142
7	SER 48	SER 93
B	U 3	G 119
C	ASN 23	ARG 269
D	VAL 86	ILE 297
E	LEU 52	VAL 261
F	ARG 56	PHE 230
G	ARG 42	GLY 214
H	LYS 43	MET 95
K	SER 54	ILE 246
L	MET 1	LEU 121
M	PHE 80	TYR 256
N	LEU 2	GLY 135
O	MET 11	VAL 126
P	HIS 47	PHE 166
Q	GLN 115	PHE 232
R	ARG 3	LYS 117
S	VAL 88	THR 234
T	PRO 26	ARG 169
U	LEU 102	ILE 193
V	ARG 50	ARG 173
W	A 5	C 106
X	THR 66	LYS 165
Y	ARG 72	LEU 145
Z	ASP 63	LEU 152
A	U 2	A 2810
0	LYS 38	TYR 101

There are 85 helices in PDB entry 5X8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	9	26	Right-handed alpha
Helix 2	AA2	1	28	38	Right-handed alpha
Helix 3	AA3	3	101	109	Right-handed alpha
Helix 4	AA4	3	110	116	Right-handed alpha
Helix 5	AA5	3	117	131	Right-handed alpha
Helix 6	AA6	4	95	100	Right-handed alpha
Helix 7	AA7	4	125	132	Right-handed alpha
Helix 8	AA8	4	140	145	Right-handed alpha
Helix 9	AA9	5	29	33	Right-handed 310
Helix 10	AB1	6	95	128	Right-handed alpha
Helix 11	AB2	6	132	138	Right-handed alpha
Helix 12	AB3	7	68	73	Right-handed alpha
Helix 13	AB4	C	193	198	Right-handed 310
Helix 14	AB5	C	205	210	Right-handed alpha
Helix 15	AB6	D	145	149	Right-handed 310
Helix 16	AB7	D	150	160	Right-handed alpha
Helix 17	AB8	D	210	215	Right-handed alpha
Helix 18	AB9	E	79	95	Right-handed alpha
Helix 19	AC1	E	153	169	Right-handed alpha
Helix 20	AC2	E	187	197	Right-handed alpha
Helix 21	AC3	E	213	221	Right-handed alpha
Helix 22	AC4	E	248	259	Right-handed alpha
Helix 23	AC5	F	57	63	Right-handed alpha
Helix 24	AC6	F	66	73	Right-handed alpha
Helix 25	AC7	F	99	114	Right-handed alpha
Helix 26	AC8	F	146	160	Right-handed alpha
Helix 27	AC9	F	217	226	Right-handed alpha
Helix 28	AD1	G	98	121	Right-handed alpha
Helix 29	AD2	G	177	190	Right-handed alpha
Helix 30	AD3	H	70	77	Right-handed alpha
Helix 31	AD4	H	88	93	Right-handed alpha
Helix 32	AD5	K	55	73	Right-handed alpha
Helix 33	AD6	K	123	137	Right-handed alpha
Helix 34	AD7	K	157	161	Right-handed 310
Helix 35	AD8	K	166	171	Right-handed alpha
Helix 36	AD9	K	187	195	Right-handed alpha
Helix 37	AE1	K	198	206	Right-handed alpha
Helix 38	AE2	L	104	109	Right-handed 310
Helix 39	AE3	L	110	116	Right-handed alpha
Helix 40	AE4	M	143	149	Right-handed alpha
Helix 41	AE5	M	162	167	Right-handed alpha
Helix 42	AE6	M	177	184	Right-handed alpha
Helix 43	AE7	M	218	228	Right-handed alpha
Helix 44	AE8	M	243	253	Right-handed alpha
Helix 45	AE9	N	44	59	Right-handed alpha
Helix 46	AF1	N	110	121	Right-handed alpha
Helix 47	AF2	N	122	124	Right-handed 310
Helix 48	AF3	O	23	42	Right-handed alpha
Helix 49	AF4	O	48	65	Right-handed alpha
Helix 50	AF5	O	69	80	Right-handed alpha
Helix 51	AF6	O	82	87	Right-handed alpha
Helix 52	AF7	O	92	97	Right-handed alpha
Helix 53	AF8	P	48	62	Right-handed alpha
Helix 54	AF9	P	100	104	Right-handed alpha
Helix 55	AG1	P	116	131	Right-handed alpha
Helix 56	AG2	P	150	161	Right-handed alpha
Helix 57	AG3	Q	122	138	Right-handed alpha
Helix 58	AG4	Q	175	178	Right-handed 310
Helix 59	AG5	Q	226	230	Right-handed 310
Helix 60	AG6	R	8	21	Right-handed alpha
Helix 61	AG7	R	31	70	Right-handed alpha
Helix 62	AG8	R	71	73	Right-handed 310
Helix 63	AG9	R	77	87	Right-handed alpha
Helix 64	AH1	R	99	104	Right-handed alpha
Helix 65	AH2	R	104	117	Right-handed alpha
Helix 66	AH3	S	106	111	Right-handed alpha
Helix 67	AH4	T	42	53	Right-handed alpha
Helix 68	AH5	T	57	65	Right-handed alpha
Helix 69	AH6	T	72	90	Right-handed alpha
Helix 70	AH7	T	153	161	Right-handed alpha
Helix 71	AH8	U	110	113	Right-handed 310
Helix 72	AH9	U	121	132	Right-handed alpha
Helix 73	AI1	U	145	150	Right-handed alpha
Helix 74	AI2	U	183	189	Right-handed alpha
Helix 75	AI3	V	50	54	Right-handed 310
Helix 76	AI4	V	57	61	Right-handed 310
Helix 77	AI5	X	149	165	Right-handed alpha
Helix 78	AI6	Y	122	132	Right-handed alpha
Helix 79	AI7	Y	133	142	Right-handed alpha
Helix 80	AI8	Z	65	70	Right-handed 310
Helix 81	AI9	Z	72	96	Right-handed alpha
Helix 82	AJ1	Z	101	125	Right-handed alpha
Helix 83	AJ2	Z	129	142	Right-handed alpha
Helix 84	AJ3	0	81	86	Right-handed alpha
Helix 85	AJ4	0	94	99	Right-handed alpha

There are 42 sheets in PDB entry 5X8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	13	16	first strand
Strand 2	2	31	34	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	102	104	first strand
Strand 2	4	110	113	anti-parallel
Strand 3	4	135	137	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	15	19	first strand
Strand 2	5	22	26	anti-parallel
Strand 3	5	34	35	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	90	91	first strand
Strand 2	S	154	158	anti-parallel
Strand 3	S	181	191	anti-parallel
Strand 4	S	215	225	anti-parallel
Strand 5	S	142	144	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	78	first strand
Strand 2	C	87	90	anti-parallel
Strand 3	C	98	100	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	185	188	anti-parallel
Strand 3	C	137	140	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	163	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	176	181	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	264	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	289	294	anti-parallel
Strand 4	D	92	103	anti-parallel
Strand 5	D	109	116	anti-parallel
Strand 6	D	275	279	anti-parallel
Strand 7	D	266	270	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	172	first strand
Strand 2	D	136	143	anti-parallel
Strand 3	D	122	127	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	252	253	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	229	first strand
Strand 2	E	206	208	parallel
Strand 3	E	245	246	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	140	144	anti-parallel
Strand 3	F	87	91	anti-parallel
Strand 4	F	206	209	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	89	94	anti-parallel
Strand 3	G	80	84	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	59	first strand
Strand 2	G	62	66	anti-parallel
Strand 3	G	73	75	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	164	first strand
Strand 2	G	170	175	anti-parallel
Strand 3	G	123	129	anti-parallel
Strand 4	G	202	204	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	142	146	anti-parallel
Strand 3	G	153	156	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	53	first strand
Strand 2	H	84	86	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	221	223	first strand
Strand 2	K	152	156	parallel
Strand 3	K	114	118	parallel
Strand 4	K	237	238	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	10	first strand
Strand 2	L	16	22	anti-parallel
Strand 3	L	38	46	anti-parallel
Strand 4	L	57	64	anti-parallel
Strand 5	L	83	87	anti-parallel
Strand 6	L	7	10	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	76	78	first strand
Strand 2	Q	192	197	anti-parallel
Strand 3	Q	180	185	anti-parallel
Strand 4	Q	163	171	anti-parallel
Strand 5	Q	147	153	anti-parallel
Strand 6	Q	203	211	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	159	160	first strand
Strand 2	M	199	200	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	175	176	first strand
Strand 2	M	211	212	parallel
Strand 3	M	231	232	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	66	first strand
Strand 2	N	102	107	anti-parallel
Strand 3	N	32	36	anti-parallel
Strand 4	N	129	133	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	43	first strand
Strand 2	N	93	97	anti-parallel
Strand 3	N	72	73	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	44	47	first strand
Strand 2	O	120	123	anti-parallel
Strand 3	O	107	109	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	93	99	first strand
Strand 2	P	82	88	anti-parallel
Strand 3	P	72	77	anti-parallel
Strand 4	P	140	141	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	132	136	first strand
Strand 2	S	125	129	anti-parallel
Strand 3	S	161	162	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	164	165	first strand
Strand 2	S	170	171	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	197	200	first strand
Strand 2	S	207	210	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	34	first strand
Strand 2	T	130	138	anti-parallel
Strand 3	T	98	100	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	34	first strand
Strand 2	T	130	138	anti-parallel
Strand 3	T	104	107	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	111	117	first strand
Strand 2	T	121	127	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	115	118	first strand
Strand 2	U	133	138	anti-parallel
Strand 3	U	172	178	anti-parallel
Strand 4	U	159	166	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	129	130	first strand
Strand 2	V	98	101	anti-parallel
Strand 3	V	86	93	anti-parallel
Strand 4	V	74	77	anti-parallel
Strand 5	V	134	136	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	107	110	first strand
Strand 2	V	122	125	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	149	151	first strand
Strand 2	V	157	159	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	78	79	first strand
Strand 2	X	92	95	anti-parallel
Strand 3	X	115	117	anti-parallel
Strand 4	X	107	109	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	122	124	first strand
Strand 2	X	136	138	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	83	84	first strand
Strand 2	Y	98	99	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	87	88	first strand
Strand 2	Y	94	95	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	104	110	first strand
Strand 2	Y	115	121	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	58	63	first strand
Strand 2	46	53	anti-parallel
Strand 3	67	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8T