Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X8Y entry

There are 2 chains in PDB entry 5X8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 176THR 351
B
 SER 176THR 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5X8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
226 230Right-handed 310
Helix 2
AA2
A
237 241Right-handed 310
Helix 3
AA3
A
244 248Right-handed 310
Helix 4
AA4
A
252 256Right-handed 310
Helix 5
AA5
B
180 183Right-handed 310
Helix 6
AA6
B
226 230Right-handed 310
Helix 7
AA7
B
237 241Right-handed 310
Helix 8
AA8
B
244 248Right-handed 310
Helix 9
AA9
B
252 256Right-handed 310
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There are 3 sheets in PDB entry 5X8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
210 217anti-parallel
Strand 5
A
200 206anti-parallel
Strand 6
A
192 196anti-parallel
Strand 7
A
185 189anti-parallel
Strand 8
B
185 189anti-parallel
Strand 9
B
192 196anti-parallel
Strand 10
B
200 206anti-parallel
Strand 11
B
210 217anti-parallel
Strand 12
B
273 277anti-parallel
Strand 13
B
321 325anti-parallel
Strand 14
B
328 331anti-parallel
Strand 15
B
298 299anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
310 313parallel
Strand 3
A
335 337anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
310 313parallel
Strand 3
B
336 337anti-parallel
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