Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X9B entry

There is 1 chain in PDB entry 5X9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 133THR 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5X9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 147Right-handed alpha
Helix 2
AA2
A
150 176Right-handed alpha
Helix 3
AA3
A
221 223Right-handed 310
Helix 4
AA4
A
246 250Right-handed 310
Helix 5
AA5
A
258 271Right-handed alpha
Helix 6
AA6
A
275 284Right-handed alpha
Helix 7
AA7
A
341 357Right-handed alpha
Helix 8
AA8
A
359 374Right-handed alpha
Helix 9
AA9
A
375 378Right-handed 310
Helix 10
AB1
A
381 396Right-handed alpha
Helix 11
AB2
A
400 402Right-handed 310
Helix 12
AB3
A
403 421Right-handed alpha
Helix 13
AB4
A
433 438Right-handed 310
Helix 14
AB5
A
439 454Right-handed alpha
Helix 15
AB6
A
456 462Right-handed 310
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There are 2 sheets in PDB entry 5X9B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
307 318parallel
Strand 4
A
321 324anti-parallel
Strand 5
A
337 339anti-parallel
Strand 6
A
230 235anti-parallel
Strand 7
A
256 257anti-parallel
Strand 8
A
252 253anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
337 339anti-parallel
Strand 4
A
321 324anti-parallel
Strand 5
A
307 318anti-parallel
Strand 6
A
297 301anti-parallel
Strand 7
A
286 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il