Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X9C entry

There are 2 chains in PDB entry 5X9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 134THR 463
B
 SER 134THR 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5X9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 146Right-handed alpha
Helix 2
AA2
A
150 176Right-handed alpha
Helix 3
AA3
A
221 223Right-handed 310
Helix 4
AA4
A
246 250Right-handed 310
Helix 5
AA5
A
258 272Right-handed alpha
Helix 6
AA6
A
275 284Right-handed alpha
Helix 7
AA7
A
330 335Right-handed alpha
Helix 8
AA8
A
341 357Right-handed alpha
Helix 9
AA9
A
359 374Right-handed alpha
Helix 10
AB1
A
375 380Right-handed 310
Helix 11
AB2
A
381 396Right-handed alpha
Helix 12
AB3
A
400 402Right-handed 310
Helix 13
AB4
A
403 422Right-handed alpha
Helix 14
AB5
A
439 454Right-handed alpha
Helix 15
AB6
A
456 462Right-handed 310
Helix 16
AB7
B
135 146Right-handed alpha
Helix 17
AB8
B
152 176Right-handed alpha
Helix 18
AB9
B
211 213Right-handed 310
Helix 19
AC1
B
221 223Right-handed 310
Helix 20
AC2
B
246 250Right-handed 310
Helix 21
AC3
B
258 272Right-handed alpha
Helix 22
AC4
B
275 284Right-handed alpha
Helix 23
AC5
B
330 335Right-handed alpha
Helix 24
AC6
B
341 357Right-handed alpha
Helix 25
AC7
B
359 374Right-handed alpha
Helix 26
AC8
B
375 380Right-handed 310
Helix 27
AC9
B
381 396Right-handed alpha
Helix 28
AD1
B
400 402Right-handed 310
Helix 29
AD2
B
403 422Right-handed alpha
Helix 30
AD3
B
439 454Right-handed alpha
Helix 31
AD4
B
456 462Right-handed 310
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There are 6 sheets in PDB entry 5X9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
306 318parallel
Strand 4
A
321 324anti-parallel
Strand 5
A
337 339anti-parallel
Strand 6
A
230 235anti-parallel
Strand 7
A
215 219anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
306 318parallel
Strand 4
A
297 303anti-parallel
Strand 5
A
286 289anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 257anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
306 318parallel
Strand 4
B
321 324anti-parallel
Strand 5
B
337 339anti-parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
215 219anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
306 318parallel
Strand 4
B
297 303anti-parallel
Strand 5
B
286 289anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il