Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X9D entry

There is 1 chain in PDB entry 5X9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5X9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
82 93Right-handed alpha
Helix 4
AA4
A
102 120Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
135 141Right-handed alpha
Helix 7
AA7
A
155 166Right-handed alpha
Helix 8
AA8
A
170 182Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
194 208Right-handed alpha
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
284 301Right-handed alpha
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There are 2 sheets in PDB entry 5X9D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
2 6parallel
Strand 4
A
68 71parallel
Strand 5
A
96 99parallel
Strand 6
A
123 124parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
244 250parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
147 153anti-parallel
Strand 5
A
264 271anti-parallel
Strand 6
A
275 281anti-parallel
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