Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X9V entry

There are 4 chains in PDB entry 5X9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 10	ILE 502
B	ILE 10	ILE 502
C	ILE 10	ILE 502
D	ILE 10	ILE 502

There are 86 helices in PDB entry 5X9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	33	Right-handed alpha
Helix 2	AA2	A	56	64	Right-handed alpha
Helix 3	AA3	A	68	85	Right-handed alpha
Helix 4	AA4	A	88	109	Right-handed alpha
Helix 5	AA5	A	112	134	Right-handed alpha
Helix 6	AA6	A	143	154	Right-handed alpha
Helix 7	AA7	A	157	172	Right-handed alpha
Helix 8	AA8	A	181	184	Right-handed 310
Helix 9	AA9	A	234	239	Right-handed 310
Helix 10	AB1	A	240	264	Right-handed alpha
Helix 11	AB2	A	275	285	Right-handed alpha
Helix 12	AB3	A	294	306	Right-handed alpha
Helix 13	AB4	A	311	317	Right-handed 310
Helix 14	AB5	A	318	323	Right-handed alpha
Helix 15	AB6	A	360	385	Right-handed alpha
Helix 16	AB7	A	391	403	Right-handed alpha
Helix 17	AB8	A	403	408	Right-handed alpha
Helix 18	AB9	A	411	423	Right-handed alpha
Helix 19	AC1	A	424	434	Right-handed alpha
Helix 20	AC2	A	437	452	Right-handed alpha
Helix 21	AC3	A	478	497	Right-handed alpha
Helix 22	AC4	B	13	33	Right-handed alpha
Helix 23	AC5	B	56	64	Right-handed alpha
Helix 24	AC6	B	68	85	Right-handed alpha
Helix 25	AC7	B	88	109	Right-handed alpha
Helix 26	AC8	B	112	135	Right-handed alpha
Helix 27	AC9	B	143	154	Right-handed alpha
Helix 28	AD1	B	157	172	Right-handed alpha
Helix 29	AD2	B	173	177	Right-handed 310
Helix 30	AD3	B	181	184	Right-handed 310
Helix 31	AD4	B	234	239	Right-handed 310
Helix 32	AD5	B	240	263	Right-handed alpha
Helix 33	AD6	B	275	285	Right-handed alpha
Helix 34	AD7	B	294	306	Right-handed alpha
Helix 35	AD8	B	311	317	Right-handed 310
Helix 36	AD9	B	318	323	Right-handed alpha
Helix 37	AE1	B	360	385	Right-handed alpha
Helix 38	AE2	B	391	403	Right-handed alpha
Helix 39	AE3	B	404	406	Right-handed 310
Helix 40	AE4	B	411	423	Right-handed alpha
Helix 41	AE5	B	424	434	Right-handed alpha
Helix 42	AE6	B	437	452	Right-handed alpha
Helix 43	AE7	B	469	473	Right-handed alpha
Helix 44	AE8	B	478	497	Right-handed alpha
Helix 45	AE9	C	13	33	Right-handed alpha
Helix 46	AF1	C	56	64	Right-handed alpha
Helix 47	AF2	C	68	85	Right-handed alpha
Helix 48	AF3	C	88	109	Right-handed alpha
Helix 49	AF4	C	112	135	Right-handed alpha
Helix 50	AF5	C	143	154	Right-handed alpha
Helix 51	AF6	C	157	172	Right-handed alpha
Helix 52	AF7	C	173	177	Right-handed 310
Helix 53	AF8	C	181	184	Right-handed 310
Helix 54	AF9	C	234	239	Right-handed 310
Helix 55	AG1	C	240	263	Right-handed alpha
Helix 56	AG2	C	275	285	Right-handed alpha
Helix 57	AG3	C	294	306	Right-handed alpha
Helix 58	AG4	C	311	317	Right-handed 310
Helix 59	AG5	C	318	323	Right-handed alpha
Helix 60	AG6	C	360	385	Right-handed alpha
Helix 61	AG7	C	391	405	Right-handed alpha
Helix 62	AG8	C	411	424	Right-handed alpha
Helix 63	AG9	C	424	434	Right-handed alpha
Helix 64	AH1	C	437	452	Right-handed alpha
Helix 65	AH2	C	478	497	Right-handed alpha
Helix 66	AH3	D	13	33	Right-handed alpha
Helix 67	AH4	D	56	64	Right-handed alpha
Helix 68	AH5	D	68	85	Right-handed alpha
Helix 69	AH6	D	88	109	Right-handed alpha
Helix 70	AH7	D	112	135	Right-handed alpha
Helix 71	AH8	D	143	154	Right-handed alpha
Helix 72	AH9	D	157	172	Right-handed alpha
Helix 73	AI1	D	173	177	Right-handed 310
Helix 74	AI2	D	181	184	Right-handed 310
Helix 75	AI3	D	234	239	Right-handed 310
Helix 76	AI4	D	240	263	Right-handed alpha
Helix 77	AI5	D	275	285	Right-handed alpha
Helix 78	AI6	D	294	306	Right-handed alpha
Helix 79	AI7	D	311	317	Right-handed 310
Helix 80	AI8	D	318	323	Right-handed alpha
Helix 81	AI9	D	360	385	Right-handed alpha
Helix 82	AJ1	D	391	403	Right-handed alpha
Helix 83	AJ2	D	411	424	Right-handed alpha
Helix 84	AJ3	D	424	434	Right-handed alpha
Helix 85	AJ4	D	437	452	Right-handed alpha
Helix 86	AJ5	D	478	497	Right-handed alpha

There are 21 sheets in PDB entry 5X9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	B	498	501	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	353	358	parallel
Strand 3	A	195	197	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	340	346	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	A	213	223	anti-parallel
Strand 5	A	267	270	parallel
Strand 6	A	288	290	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	475	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	459	first strand
Strand 2	A	466	468	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	51	54	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	190	first strand
Strand 2	B	353	358	parallel
Strand 3	B	195	197	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	340	346	anti-parallel
Strand 3	B	327	335	anti-parallel
Strand 4	B	213	223	anti-parallel
Strand 5	B	267	270	parallel
Strand 6	B	288	290	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	475	477	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	466	468	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	51	54	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	353	358	parallel
Strand 3	C	195	197	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	340	346	anti-parallel
Strand 3	C	327	335	anti-parallel
Strand 4	C	213	223	anti-parallel
Strand 5	C	267	270	parallel
Strand 6	C	288	290	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	388	first strand
Strand 2	C	475	477	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	459	first strand
Strand 2	C	466	468	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	502	first strand
Strand 2	D	41	45	parallel
Strand 3	D	51	54	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	500	501	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	190	first strand
Strand 2	D	353	358	parallel
Strand 3	D	195	197	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	340	346	anti-parallel
Strand 3	D	327	335	anti-parallel
Strand 4	D	213	223	anti-parallel
Strand 5	D	267	270	parallel
Strand 6	D	288	290	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	388	first strand
Strand 2	D	475	477	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	459	first strand
Strand 2	D	466	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9V