Analysis of interatomic Contacts of Structural Units in PDB entry:
5X9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X9Y entry

There are 3 chains in PDB entry 5X9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 12LYS 301
A
 VAL 12LYS 301
B
 VAL 12LYS 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5X9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
15 30Right-handed alpha
Helix 2
AA2
C
57 59Right-handed 310
Helix 3
AA3
C
60 66Right-handed alpha
Helix 4
AA4
C
155 174Right-handed alpha
Helix 5
AA5
C
199 204Right-handed alpha
Helix 6
AA6
C
244 255Right-handed alpha
Helix 7
AA7
C
287 299Right-handed alpha
Helix 8
AA8
A
15 30Right-handed alpha
Helix 9
AA9
A
57 59Right-handed 310
Helix 10
AB1
A
60 66Right-handed alpha
Helix 11
AB2
A
155 174Right-handed alpha
Helix 12
AB3
A
199 204Right-handed alpha
Helix 13
AB4
A
244 255Right-handed alpha
Helix 14
AB5
A
287 300Right-handed alpha
Helix 15
AB6
B
15 30Right-handed alpha
Helix 16
AB7
B
57 66Right-handed alpha
Helix 17
AB8
B
155 174Right-handed alpha
Helix 18
AB9
B
199 204Right-handed alpha
Helix 19
AC1
B
244 255Right-handed alpha
Helix 20
AC2
B
287 298Right-handed alpha
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There are 6 sheets in PDB entry 5X9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 128first strand
Strand 2
C
114 119anti-parallel
Strand 3
C
102 106anti-parallel
Strand 4
C
134 138anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
34 40anti-parallel
Strand 7
C
178 182parallel
Strand 8
C
192 193anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 215first strand
Strand 2
C
218 225anti-parallel
Strand 3
C
260 266anti-parallel
Strand 4
C
232 237parallel
Strand 5
C
240 242anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 128first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
134 138anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
34 40anti-parallel
Strand 7
A
178 182parallel
Strand 8
A
192 193anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
261 266anti-parallel
Strand 4
A
233 237parallel
Strand 5
A
240 241anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 128first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
102 106anti-parallel
Strand 4
B
134 138anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
34 40anti-parallel
Strand 7
B
178 182parallel
Strand 8
B
192 193anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 215first strand
Strand 2
B
218 224anti-parallel
Strand 3
B
262 266anti-parallel
Strand 4
B
234 237parallel
Strand 5
B
240 242anti-parallel
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