Analysis of interatomic Contacts of Structural Units in PDB entry:
5XAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XAF entry

There are 6 chains in PDB entry 5XAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 438
B	MET 1	ALA 438
C	MET 1	VAL 440
D	MET 1	ASP 441
E	MET 6	GLU 141
F	MET 1	LEU 378

There are 97 helices in PDB entry 5XAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	114	127	Right-handed alpha
Helix 8	AA8	A	143	161	Right-handed alpha
Helix 9	AA9	A	174	178	Right-handed 310
Helix 10	AB1	A	182	195	Right-handed alpha
Helix 11	AB2	A	196	198	Right-handed 310
Helix 12	AB3	A	206	218	Right-handed alpha
Helix 13	AB4	A	223	244	Right-handed alpha
Helix 14	AB5	A	251	260	Right-handed alpha
Helix 15	AB6	A	287	295	Right-handed alpha
Helix 16	AB7	A	296	301	Right-handed 310
Helix 17	AB8	A	306	310	Right-handed 310
Helix 18	AB9	A	324	339	Right-handed alpha
Helix 19	AC1	A	384	401	Right-handed alpha
Helix 20	AC2	A	405	410	Right-handed alpha
Helix 21	AC3	A	414	437	Right-handed alpha
Helix 22	AC4	B	10	29	Right-handed alpha
Helix 23	AC5	B	48	51	Right-handed 310
Helix 24	AC6	B	72	81	Right-handed alpha
Helix 25	AC7	B	83	87	Right-handed 310
Helix 26	AC8	B	88	90	Right-handed 310
Helix 27	AC9	B	102	108	Right-handed alpha
Helix 28	AD1	B	109	128	Right-handed alpha
Helix 29	AD2	B	144	161	Right-handed alpha
Helix 30	AD3	B	174	178	Right-handed 310
Helix 31	AD4	B	182	198	Right-handed alpha
Helix 32	AD5	B	206	215	Right-handed alpha
Helix 33	AD6	B	223	244	Right-handed alpha
Helix 34	AD7	B	251	260	Right-handed alpha
Helix 35	AD8	B	287	296	Right-handed alpha
Helix 36	AD9	B	297	301	Right-handed 310
Helix 37	AE1	B	324	337	Right-handed alpha
Helix 38	AE2	B	339	343	Right-handed 310
Helix 39	AE3	B	384	400	Right-handed alpha
Helix 40	AE4	B	405	410	Right-handed alpha
Helix 41	AE5	B	414	435	Right-handed alpha
Helix 42	AE6	C	10	29	Right-handed alpha
Helix 43	AE7	C	47	51	Right-handed 310
Helix 44	AE8	C	72	81	Right-handed alpha
Helix 45	AE9	C	88	90	Right-handed 310
Helix 46	AF1	C	102	108	Right-handed alpha
Helix 47	AF2	C	110	113	Right-handed 310
Helix 48	AF3	C	114	128	Right-handed alpha
Helix 49	AF4	C	143	162	Right-handed alpha
Helix 50	AF5	C	182	195	Right-handed alpha
Helix 51	AF6	C	206	218	Right-handed alpha
Helix 52	AF7	C	223	244	Right-handed alpha
Helix 53	AF8	C	251	260	Right-handed alpha
Helix 54	AF9	C	277	282	Right-handed alpha
Helix 55	AG1	C	287	296	Right-handed alpha
Helix 56	AG2	C	297	301	Right-handed 310
Helix 57	AG3	C	306	310	Right-handed 310
Helix 58	AG4	C	324	339	Right-handed alpha
Helix 59	AG5	C	384	400	Right-handed alpha
Helix 60	AG6	C	404	410	Right-handed alpha
Helix 61	AG7	C	414	437	Right-handed alpha
Helix 62	AG8	D	10	28	Right-handed alpha
Helix 63	AG9	D	40	46	Right-handed 310
Helix 64	AH1	D	48	51	Right-handed 310
Helix 65	AH2	D	57	59	Right-handed 310
Helix 66	AH3	D	71	81	Right-handed alpha
Helix 67	AH4	D	83	87	Right-handed 310
Helix 68	AH5	D	88	90	Right-handed 310
Helix 69	AH6	D	102	108	Right-handed alpha
Helix 70	AH7	D	109	128	Right-handed alpha
Helix 71	AH8	D	144	161	Right-handed alpha
Helix 72	AH9	D	182	198	Right-handed alpha
Helix 73	AI1	D	206	216	Right-handed alpha
Helix 74	AI2	D	223	238	Right-handed alpha
Helix 75	AI3	D	239	244	Right-handed alpha
Helix 76	AI4	D	251	260	Right-handed alpha
Helix 77	AI5	D	287	296	Right-handed alpha
Helix 78	AI6	D	297	301	Right-handed 310
Helix 79	AI7	D	306	310	Right-handed 310
Helix 80	AI8	D	324	338	Right-handed alpha
Helix 81	AI9	D	339	343	Right-handed 310
Helix 82	AJ1	D	384	400	Right-handed alpha
Helix 83	AJ2	D	405	410	Right-handed alpha
Helix 84	AJ3	D	415	438	Right-handed alpha
Helix 85	AJ4	E	46	139	Right-handed alpha
Helix 86	AJ5	F	13	23	Right-handed alpha
Helix 87	AJ6	F	48	52	Right-handed 310
Helix 88	AJ7	F	68	73	Right-handed alpha
Helix 89	AJ8	F	73	84	Right-handed alpha
Helix 90	AJ9	F	85	88	Right-handed 310
Helix 91	AK1	F	127	132	Right-handed alpha
Helix 92	AK2	F	165	171	Right-handed alpha
Helix 93	AK3	F	263	276	Right-handed alpha
Helix 94	AK4	F	278	283	Right-handed alpha
Helix 95	AK5	F	283	303	Right-handed alpha
Helix 96	AK6	F	339	341	Right-handed 310
Helix 97	AK7	F	342	354	Right-handed alpha

There are 14 sheets in PDB entry 5XAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	349	356	parallel
Strand 5	E	17	25	anti-parallel
Strand 6	E	7	13	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel
Strand 7	B	267	273	parallel
Strand 8	B	374	381	anti-parallel
Strand 9	B	312	320	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	352	356	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel
Strand 7	D	267	273	parallel
Strand 8	D	374	381	anti-parallel
Strand 9	D	312	320	anti-parallel
Strand 10	D	351	356	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	61	63	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	2	6	parallel
Strand 3	F	39	41	parallel
Strand 4	F	61	62	parallel
Strand 5	F	310	311	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	99	first strand
Strand 2	F	181	184	anti-parallel
Strand 3	F	147	150	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	262	first strand
Strand 2	F	220	224	anti-parallel
Strand 3	F	198	207	anti-parallel
Strand 4	F	313	321	anti-parallel
Strand 5	F	327	333	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	262	first strand
Strand 2	F	220	224	anti-parallel
Strand 3	F	198	207	anti-parallel
Strand 4	F	213	216	anti-parallel
Strand 5	F	375	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XAF