Analysis of interatomic Contacts of Structural Units in PDB entry:
5XAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XAM entry

There are 2 chains in PDB entry 5XAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 29LYS 758
B
 ASN 31GLU 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5XAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 50Right-handed alpha
Helix 2
AA2
A
92 111Right-handed alpha
Helix 3
AA3
A
133 145Right-handed alpha
Helix 4
AA4
A
211 223Right-handed alpha
Helix 5
AA5
A
259 271Right-handed alpha
Helix 6
AA6
A
288 318Right-handed alpha
Helix 7
AA7
A
319 344Right-handed alpha
Helix 8
AA8
A
351 381Right-handed alpha
Helix 9
AA9
A
383 412Right-handed alpha
Helix 10
AB1
A
418 438Right-handed alpha
Helix 11
AB2
A
441 453Right-handed alpha
Helix 12
AB3
A
473 494Right-handed alpha
Helix 13
AB4
A
519 528Right-handed alpha
Helix 14
AB5
A
562 570Right-handed alpha
Helix 15
AB6
A
570 575Right-handed alpha
Helix 16
AB7
A
588 614Right-handed alpha
Helix 17
AB8
A
619 645Right-handed alpha
Helix 18
AB9
A
649 675Right-handed alpha
Helix 19
AC1
A
676 679Right-handed 310
Helix 20
AC2
A
689 718Right-handed alpha
Helix 21
AC3
A
720 758Right-handed alpha
Helix 22
AC4
B
33 50Right-handed alpha
Helix 23
AC5
B
95 107Right-handed alpha
Helix 24
AC6
B
133 145Right-handed alpha
Helix 25
AC7
B
213 221Right-handed alpha
Helix 26
AC8
B
259 271Right-handed alpha
Helix 27
AC9
B
288 305Right-handed alpha
Helix 28
AD1
B
309 317Right-handed alpha
Helix 29
AD2
B
322 343Right-handed alpha
Helix 30
AD3
B
349 376Right-handed alpha
Helix 31
AD4
B
377 379Right-handed 310
Helix 32
AD5
B
384 409Right-handed alpha
Helix 33
AD6
B
410 415Right-handed alpha
Helix 34
AD7
B
420 441Right-handed alpha
Helix 35
AD8
B
441 454Right-handed alpha
Helix 36
AD9
B
473 496Right-handed alpha
Helix 37
AE1
B
520 528Right-handed alpha
Helix 38
AE2
B
565 570Right-handed alpha
Helix 39
AE3
B
572 576Right-handed 310
Helix 40
AE4
B
588 618Right-handed alpha
Helix 41
AE5
B
619 645Right-handed alpha
Helix 42
AE6
B
649 664Right-handed alpha
Helix 43
AE7
B
664 681Right-handed alpha
Helix 44
AE8
B
687 696Right-handed alpha
Helix 45
AE9
B
696 714Right-handed alpha
Helix 46
AF1
B
722 742Right-handed alpha
Helix 47
AF2
B
744 754Right-handed alpha
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There are 7 sheets in PDB entry 5XAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
279 280anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
124 128anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
237 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
207 208anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
508 511anti-parallel
Strand 3
A
584 585anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
279 286anti-parallel
Strand 4
B
580 585anti-parallel
Strand 5
B
507 513anti-parallel
Strand 6
B
552 558anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
238 239anti-parallel
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