Analysis of interatomic Contacts of Structural Units in PDB entry:
5XAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XAP entry

There is 1 chain in PDB entry 5XAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 29ARG 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5XAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 51Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
92 110Right-handed alpha
Helix 5
AA5
A
133 146Right-handed alpha
Helix 6
AA6
A
162 169Right-handed alpha
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
211 223Right-handed alpha
Helix 9
AA9
A
259 273Right-handed alpha
Helix 10
AB1
A
288 344Right-handed alpha
Helix 11
AB2
A
349 363Right-handed alpha
Helix 12
AB3
A
364 380Right-handed alpha
Helix 13
AB4
A
383 416Right-handed alpha
Helix 14
AB5
A
418 454Right-handed alpha
Helix 15
AB6
A
473 495Right-handed alpha
Helix 16
AB7
A
518 528Right-handed alpha
Helix 17
AB8
A
562 576Right-handed alpha
Helix 18
AB9
A
588 618Right-handed alpha
Helix 19
AC1
A
619 645Right-handed alpha
Helix 20
AC2
A
649 681Right-handed alpha
Helix 21
AC3
A
685 697Right-handed alpha
Helix 22
AC4
A
697 719Right-handed alpha
Helix 23
AC5
A
720 744Right-handed alpha
Helix 24
AC6
A
744 760Right-handed alpha
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There are 6 sheets in PDB entry 5XAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
67 68anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
347 348parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
124 130anti-parallel
Strand 3
A
79 86anti-parallel
Strand 4
A
279 287anti-parallel
Strand 5
A
580 587anti-parallel
Strand 6
A
506 513anti-parallel
Strand 7
A
552 558anti-parallel
Strand 8
A
540 543anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
237 243anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 197first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
251 258anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
647 648parallel
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