Analysis of interatomic Contacts of Structural Units in PDB entry:
5XAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XAV entry

There are 2 chains in PDB entry 5XAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 174VAL 562
B
 PRO 174VAL 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5XAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
221 226Right-handed 310
Helix 2
AA2
A
232 240Right-handed alpha
Helix 3
AA3
A
253 257Right-handed 310
Helix 4
AA4
A
260 267Right-handed alpha
Helix 5
AA5
A
268 281Right-handed alpha
Helix 6
AA6
A
291 308Right-handed alpha
Helix 7
AA7
A
328 333Right-handed 310
Helix 8
AA8
A
335 345Right-handed alpha
Helix 9
AA9
A
346 349Right-handed 310
Helix 10
AB1
A
353 362Right-handed alpha
Helix 11
AB2
A
365 369Right-handed 310
Helix 12
AB3
A
386 395Right-handed alpha
Helix 13
AB4
A
401 411Right-handed alpha
Helix 14
AB5
A
415 419Right-handed 310
Helix 15
AB6
A
431 435Right-handed 310
Helix 16
AB7
A
451 458Right-handed alpha
Helix 17
AB8
A
459 462Right-handed 310
Helix 18
AB9
A
476 482Right-handed alpha
Helix 19
AC1
A
501 508Right-handed alpha
Helix 20
AC2
A
516 525Right-handed alpha
Helix 21
AC3
A
526 528Right-handed 310
Helix 22
AC4
A
552 556Right-handed 310
Helix 23
AC5
B
221 226Right-handed 310
Helix 24
AC6
B
228 231Right-handed 310
Helix 25
AC7
B
232 240Right-handed alpha
Helix 26
AC8
B
253 257Right-handed 310
Helix 27
AC9
B
260 267Right-handed alpha
Helix 28
AD1
B
268 281Right-handed alpha
Helix 29
AD2
B
291 308Right-handed alpha
Helix 30
AD3
B
327 334Right-handed 310
Helix 31
AD4
B
335 345Right-handed alpha
Helix 32
AD5
B
346 349Right-handed 310
Helix 33
AD6
B
353 361Right-handed alpha
Helix 34
AD7
B
365 370Right-handed 310
Helix 35
AD8
B
386 395Right-handed alpha
Helix 36
AD9
B
401 411Right-handed alpha
Helix 37
AE1
B
415 419Right-handed 310
Helix 38
AE2
B
431 435Right-handed 310
Helix 39
AE3
B
451 458Right-handed alpha
Helix 40
AE4
B
459 462Right-handed 310
Helix 41
AE5
B
476 482Right-handed alpha
Helix 42
AE6
B
501 508Right-handed alpha
Helix 43
AE7
B
516 525Right-handed alpha
Helix 44
AE8
B
526 528Right-handed 310
Helix 45
AE9
B
552 556Right-handed 310
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There are 8 sheets in PDB entry 5XAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
491 494anti-parallel
Strand 3
A
468 473anti-parallel
Strand 4
A
439 444parallel
Strand 5
A
312 318parallel
Strand 6
A
285 290parallel
Strand 7
A
212 215parallel
Strand 8
A
244 249parallel
Strand 9
A
195 200anti-parallel
Strand 10
A
186 191anti-parallel
Strand 11
A
547 548anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
531 533anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
399 400anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
428 429anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 513first strand
Strand 2
B
491 494anti-parallel
Strand 3
B
468 473anti-parallel
Strand 4
B
439 444parallel
Strand 5
B
312 318parallel
Strand 6
B
285 290parallel
Strand 7
B
212 215parallel
Strand 8
B
244 249parallel
Strand 9
B
195 200anti-parallel
Strand 10
B
186 191anti-parallel
Strand 11
B
547 548anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
531 533anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
399 400anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 425first strand
Strand 2
B
428 429anti-parallel
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