Analysis of interatomic Contacts of Structural Units in PDB entry:
5XB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XB6 entry

There are 12 chains in PDB entry 5XB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 306
B	MET 1	LEU 306
C	MET 1	LEU 306
D	MET 1	LEU 306
E	MET 1	LEU 306
F	MET 1	LEU 306
G	MET 1	LEU 306
H	MET 1	LEU 306
I	MET 1	LEU 306
J	MET 2	LEU 306
K	MET 1	LEU 306
L	MET 1	LEU 306

There are156 helices in PDB entry 5XB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	61	Right-handed alpha
Helix 2	AA2	A	85	102	Right-handed alpha
Helix 3	AA3	A	118	130	Right-handed alpha
Helix 4	AA4	A	143	151	Right-handed alpha
Helix 5	AA5	A	157	160	Right-handed 310
Helix 6	AA6	A	161	179	Right-handed alpha
Helix 7	AA7	A	190	194	Right-handed 310
Helix 8	AA8	A	196	208	Right-handed alpha
Helix 9	AA9	A	224	230	Right-handed alpha
Helix 10	AB1	A	236	241	Right-handed alpha
Helix 11	AB2	A	255	266	Right-handed alpha
Helix 12	AB3	A	282	287	Right-handed alpha
Helix 13	AB4	A	287	306	Right-handed alpha
Helix 14	AB5	B	49	61	Right-handed alpha
Helix 15	AB6	B	85	102	Right-handed alpha
Helix 16	AB7	B	118	130	Right-handed alpha
Helix 17	AB8	B	143	151	Right-handed alpha
Helix 18	AB9	B	157	160	Right-handed 310
Helix 19	AC1	B	161	179	Right-handed alpha
Helix 20	AC2	B	190	194	Right-handed 310
Helix 21	AC3	B	196	208	Right-handed alpha
Helix 22	AC4	B	224	230	Right-handed alpha
Helix 23	AC5	B	236	241	Right-handed alpha
Helix 24	AC6	B	255	266	Right-handed alpha
Helix 25	AC7	B	282	287	Right-handed alpha
Helix 26	AC8	B	287	306	Right-handed alpha
Helix 27	AC9	C	49	61	Right-handed alpha
Helix 28	AD1	C	85	102	Right-handed alpha
Helix 29	AD2	C	117	130	Right-handed alpha
Helix 30	AD3	C	143	151	Right-handed alpha
Helix 31	AD4	C	157	160	Right-handed 310
Helix 32	AD5	C	161	179	Right-handed alpha
Helix 33	AD6	C	190	194	Right-handed 310
Helix 34	AD7	C	196	208	Right-handed alpha
Helix 35	AD8	C	224	230	Right-handed alpha
Helix 36	AD9	C	236	241	Right-handed alpha
Helix 37	AE1	C	255	266	Right-handed alpha
Helix 38	AE2	C	282	287	Right-handed alpha
Helix 39	AE3	C	287	306	Right-handed alpha
Helix 40	AE4	D	49	61	Right-handed alpha
Helix 41	AE5	D	85	102	Right-handed alpha
Helix 42	AE6	D	118	130	Right-handed alpha
Helix 43	AE7	D	143	151	Right-handed alpha
Helix 44	AE8	D	157	160	Right-handed 310
Helix 45	AE9	D	161	179	Right-handed alpha
Helix 46	AF1	D	190	194	Right-handed 310
Helix 47	AF2	D	196	208	Right-handed alpha
Helix 48	AF3	D	224	230	Right-handed alpha
Helix 49	AF4	D	236	241	Right-handed alpha
Helix 50	AF5	D	255	266	Right-handed alpha
Helix 51	AF6	D	282	287	Right-handed alpha
Helix 52	AF7	D	287	306	Right-handed alpha
Helix 53	AF8	E	49	61	Right-handed alpha
Helix 54	AF9	E	85	102	Right-handed alpha
Helix 55	AG1	E	118	130	Right-handed alpha
Helix 56	AG2	E	143	151	Right-handed alpha
Helix 57	AG3	E	157	160	Right-handed 310
Helix 58	AG4	E	161	179	Right-handed alpha
Helix 59	AG5	E	190	194	Right-handed 310
Helix 60	AG6	E	196	208	Right-handed alpha
Helix 61	AG7	E	224	230	Right-handed alpha
Helix 62	AG8	E	236	241	Right-handed alpha
Helix 63	AG9	E	255	266	Right-handed alpha
Helix 64	AH1	E	282	287	Right-handed alpha
Helix 65	AH2	E	287	306	Right-handed alpha
Helix 66	AH3	F	49	61	Right-handed alpha
Helix 67	AH4	F	85	102	Right-handed alpha
Helix 68	AH5	F	118	130	Right-handed alpha
Helix 69	AH6	F	143	150	Right-handed alpha
Helix 70	AH7	F	157	160	Right-handed 310
Helix 71	AH8	F	161	179	Right-handed alpha
Helix 72	AH9	F	190	194	Right-handed 310
Helix 73	AI1	F	196	208	Right-handed alpha
Helix 74	AI2	F	224	230	Right-handed alpha
Helix 75	AI3	F	236	241	Right-handed alpha
Helix 76	AI4	F	255	266	Right-handed alpha
Helix 77	AI5	F	282	287	Right-handed alpha
Helix 78	AI6	F	287	306	Right-handed alpha
Helix 79	AI7	G	49	60	Right-handed alpha
Helix 80	AI8	G	85	102	Right-handed alpha
Helix 81	AI9	G	118	130	Right-handed alpha
Helix 82	AJ1	G	143	151	Right-handed alpha
Helix 83	AJ2	G	157	160	Right-handed 310
Helix 84	AJ3	G	161	179	Right-handed alpha
Helix 85	AJ4	G	190	194	Right-handed 310
Helix 86	AJ5	G	196	208	Right-handed alpha
Helix 87	AJ6	G	224	230	Right-handed alpha
Helix 88	AJ7	G	236	241	Right-handed alpha
Helix 89	AJ8	G	255	266	Right-handed alpha
Helix 90	AJ9	G	282	287	Right-handed alpha
Helix 91	AK1	G	287	306	Right-handed alpha
Helix 92	AK2	H	49	60	Right-handed alpha
Helix 93	AK3	H	85	102	Right-handed alpha
Helix 94	AK4	H	118	130	Right-handed alpha
Helix 95	AK5	H	143	150	Right-handed alpha
Helix 96	AK6	H	157	160	Right-handed 310
Helix 97	AK7	H	161	179	Right-handed alpha
Helix 98	AK8	H	190	194	Right-handed 310
Helix 99	AK9	H	196	208	Right-handed alpha
Helix 100	AL1	H	224	230	Right-handed alpha
Helix 101	AL2	H	236	241	Right-handed alpha
Helix 102	AL3	H	255	266	Right-handed alpha
Helix 103	AL4	H	282	287	Right-handed alpha
Helix 104	AL5	H	287	306	Right-handed alpha
Helix 105	AL6	I	49	61	Right-handed alpha
Helix 106	AL7	I	85	102	Right-handed alpha
Helix 107	AL8	I	118	130	Right-handed alpha
Helix 108	AL9	I	143	151	Right-handed alpha
Helix 109	AM1	I	157	160	Right-handed 310
Helix 110	AM2	I	161	179	Right-handed alpha
Helix 111	AM3	I	190	194	Right-handed 310
Helix 112	AM4	I	196	208	Right-handed alpha
Helix 113	AM5	I	224	230	Right-handed alpha
Helix 114	AM6	I	236	241	Right-handed alpha
Helix 115	AM7	I	255	266	Right-handed alpha
Helix 116	AM8	I	282	287	Right-handed alpha
Helix 117	AM9	I	287	306	Right-handed alpha
Helix 118	AN1	J	49	61	Right-handed alpha
Helix 119	AN2	J	85	102	Right-handed alpha
Helix 120	AN3	J	118	130	Right-handed alpha
Helix 121	AN4	J	143	150	Right-handed alpha
Helix 122	AN5	J	157	160	Right-handed 310
Helix 123	AN6	J	161	179	Right-handed alpha
Helix 124	AN7	J	190	194	Right-handed 310
Helix 125	AN8	J	196	208	Right-handed alpha
Helix 126	AN9	J	224	230	Right-handed alpha
Helix 127	AO1	J	236	241	Right-handed alpha
Helix 128	AO2	J	255	266	Right-handed alpha
Helix 129	AO3	J	282	287	Right-handed alpha
Helix 130	AO4	J	287	306	Right-handed alpha
Helix 131	AO5	K	49	60	Right-handed alpha
Helix 132	AO6	K	85	102	Right-handed alpha
Helix 133	AO7	K	118	130	Right-handed alpha
Helix 134	AO8	K	143	151	Right-handed alpha
Helix 135	AO9	K	157	160	Right-handed 310
Helix 136	AP1	K	161	179	Right-handed alpha
Helix 137	AP2	K	190	194	Right-handed 310
Helix 138	AP3	K	196	208	Right-handed alpha
Helix 139	AP4	K	224	230	Right-handed alpha
Helix 140	AP5	K	236	241	Right-handed alpha
Helix 141	AP6	K	255	266	Right-handed alpha
Helix 142	AP7	K	282	287	Right-handed alpha
Helix 143	AP8	K	287	306	Right-handed alpha
Helix 144	AP9	L	49	60	Right-handed alpha
Helix 145	AQ1	L	85	102	Right-handed alpha
Helix 146	AQ2	L	118	130	Right-handed alpha
Helix 147	AQ3	L	143	151	Right-handed alpha
Helix 148	AQ4	L	157	160	Right-handed 310
Helix 149	AQ5	L	161	179	Right-handed alpha
Helix 150	AQ6	L	190	194	Right-handed 310
Helix 151	AQ7	L	196	208	Right-handed alpha
Helix 152	AQ8	L	224	230	Right-handed alpha
Helix 153	AQ9	L	236	241	Right-handed alpha
Helix 154	AR1	L	255	266	Right-handed alpha
Helix 155	AR2	L	282	287	Right-handed alpha
Helix 156	AR3	L	287	306	Right-handed alpha

There are 22 sheets in PDB entry 5XB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	276	first strand
Strand 2	A	245	250	parallel
Strand 3	A	136	139	parallel
Strand 4	A	106	116	parallel
Strand 5	A	34	40	parallel
Strand 6	A	64	68	parallel
Strand 7	A	17	23	anti-parallel
Strand 8	A	3	9	anti-parallel
Strand 9	C	3	9	anti-parallel
Strand 10	C	17	23	anti-parallel
Strand 11	C	64	68	anti-parallel
Strand 12	C	34	40	parallel
Strand 13	C	106	116	parallel
Strand 14	C	133	139	parallel
Strand 15	C	245	250	parallel
Strand 16	C	271	276	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	219	221	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	9	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	B	34	40	parallel
Strand 5	B	106	116	parallel
Strand 6	B	136	139	parallel
Strand 7	B	245	250	parallel
Strand 8	B	271	276	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	219	221	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	219	221	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	9	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	64	68	anti-parallel
Strand 4	D	34	40	parallel
Strand 5	D	106	116	parallel
Strand 6	D	136	139	parallel
Strand 7	D	245	250	parallel
Strand 8	D	271	276	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	219	221	anti-parallel

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There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	276	first strand
Strand 2	E	245	250	parallel
Strand 3	E	136	139	parallel
Strand 4	E	106	116	parallel
Strand 5	E	34	40	parallel
Strand 6	E	64	68	parallel
Strand 7	E	17	23	anti-parallel
Strand 8	E	2	9	anti-parallel
Strand 9	J	3	9	anti-parallel
Strand 10	J	17	23	anti-parallel
Strand 11	J	64	68	anti-parallel
Strand 12	J	34	40	parallel
Strand 13	J	106	116	parallel
Strand 14	J	136	139	parallel
Strand 15	J	245	250	parallel
Strand 16	J	271	276	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	185	first strand
Strand 2	E	219	221	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	9	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	64	68	anti-parallel
Strand 4	F	34	40	parallel
Strand 5	F	106	116	parallel
Strand 6	F	136	139	parallel
Strand 7	F	245	250	parallel
Strand 8	F	271	276	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	185	first strand
Strand 2	F	219	221	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	9	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	64	68	anti-parallel
Strand 4	G	34	40	parallel
Strand 5	G	106	116	parallel
Strand 6	G	136	139	parallel
Strand 7	G	245	250	parallel
Strand 8	G	271	276	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	185	first strand
Strand 2	G	219	221	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	9	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	64	68	anti-parallel
Strand 4	H	34	40	parallel
Strand 5	H	106	116	parallel
Strand 6	H	136	139	parallel
Strand 7	H	245	250	parallel
Strand 8	H	271	276	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	185	first strand
Strand 2	H	219	221	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	9	first strand
Strand 2	I	17	23	anti-parallel
Strand 3	I	64	68	anti-parallel
Strand 4	I	34	40	parallel
Strand 5	I	106	116	parallel
Strand 6	I	136	139	parallel
Strand 7	I	245	250	parallel
Strand 8	I	271	276	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	183	185	first strand
Strand 2	I	219	221	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	183	185	first strand
Strand 2	J	219	221	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	9	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	64	68	anti-parallel
Strand 4	K	34	40	parallel
Strand 5	K	106	116	parallel
Strand 6	K	136	139	parallel
Strand 7	K	245	250	parallel
Strand 8	K	271	276	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	185	first strand
Strand 2	K	219	221	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	9	first strand
Strand 2	L	17	23	anti-parallel
Strand 3	L	64	68	anti-parallel
Strand 4	L	34	40	parallel
Strand 5	L	106	117	parallel
Strand 6	L	136	141	parallel
Strand 7	L	245	250	parallel
Strand 8	L	271	276	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	183	185	first strand
Strand 2	L	219	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XB6