Analysis of interatomic Contacts of Structural Units in PDB entry:
5XBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XBM entry

There are 6 chains in PDB entry 5XBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	ASN 210
B	GLU 1	PRO 221
C	ILE 37	ASN 430
D	ILE 2	ASN 210
E	GLU 1	PRO 221
F	ILE 37	MET 428

There are 35 helices in PDB entry 5XBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	119	124	Right-handed alpha
Helix 3	AA3	A	181	185	Right-handed alpha
Helix 4	AA4	B	28	32	Right-handed 310
Helix 5	AA5	B	74	78	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	C	47	55	Right-handed alpha
Helix 8	AA8	C	71	76	Right-handed alpha
Helix 9	AA9	C	137	149	Right-handed alpha
Helix 10	AB1	C	152	163	Right-handed alpha
Helix 11	AB2	C	173	179	Right-handed alpha
Helix 12	AB3	C	183	192	Right-handed alpha
Helix 13	AB4	C	221	225	Right-handed 310
Helix 14	AB5	C	305	312	Right-handed 310
Helix 15	AB6	C	340	343	Right-handed 310
Helix 16	AB7	C	346	352	Right-handed alpha
Helix 17	AB8	C	418	423	Right-handed alpha
Helix 18	AB9	D	119	124	Right-handed alpha
Helix 19	AC1	D	181	185	Right-handed alpha
Helix 20	AC2	E	61	66	Right-handed alpha
Helix 21	AC3	E	73	77	Right-handed 310
Helix 22	AC4	E	87	91	Right-handed 310
Helix 23	AC5	E	165	167	Right-handed 310
Helix 24	AC6	E	195	197	Right-handed 310
Helix 25	AC7	F	47	55	Right-handed alpha
Helix 26	AC8	F	71	77	Right-handed alpha
Helix 27	AC9	F	137	148	Right-handed alpha
Helix 28	AD1	F	152	163	Right-handed alpha
Helix 29	AD2	F	173	178	Right-handed alpha
Helix 30	AD3	F	182	192	Right-handed alpha
Helix 31	AD4	F	221	225	Right-handed 310
Helix 32	AD5	F	305	309	Right-handed 310
Helix 33	AD6	F	339	343	Right-handed 310
Helix 34	AD7	F	347	352	Right-handed alpha
Helix 35	AD8	F	419	425	Right-handed alpha

There are 28 sheets in PDB entry 5XBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	100	103	parallel
Strand 3	A	83	85	anti-parallel
Strand 4	A	36	38	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	69	73	anti-parallel
Strand 3	A	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	127	137	anti-parallel
Strand 3	A	171	180	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	206	208	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	35	38	anti-parallel
Strand 5	B	46	49	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	80	83	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	183	193	anti-parallel
Strand 4	B	173	174	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	183	193	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	218	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	60	69	anti-parallel
Strand 3	C	404	416	anti-parallel
Strand 4	C	376	389	anti-parallel
Strand 5	C	366	369	anti-parallel
Strand 6	C	290	296	anti-parallel
Strand 7	C	277	287	anti-parallel
Strand 8	C	266	268	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	119	first strand
Strand 2	C	89	98	anti-parallel
Strand 3	C	60	69	anti-parallel
Strand 4	C	404	416	anti-parallel
Strand 5	C	376	389	anti-parallel
Strand 6	C	335	338	anti-parallel
Strand 7	C	323	325	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	214	216	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	168	172	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	69	73	anti-parallel
Strand 4	D	61	63	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	102	104	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	36	38	anti-parallel
Strand 3	D	83	85	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	127	137	anti-parallel
Strand 3	D	171	180	anti-parallel
Strand 4	D	157	161	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	190	195	anti-parallel
Strand 3	D	203	207	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	43	50	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	109	112	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	188	193	anti-parallel
Strand 4	E	172	174	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	184	185	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	163	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	213	218	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	83	95	anti-parallel
Strand 3	F	60	69	anti-parallel
Strand 4	F	404	416	anti-parallel
Strand 5	F	376	389	anti-parallel
Strand 6	F	366	369	anti-parallel
Strand 7	F	293	296	anti-parallel
Strand 8	F	277	284	anti-parallel
Strand 9	F	266	268	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	83	95	anti-parallel
Strand 3	F	60	69	anti-parallel
Strand 4	F	404	416	anti-parallel
Strand 5	F	376	389	anti-parallel
Strand 6	F	335	338	anti-parallel
Strand 7	F	324	325	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	108	112	anti-parallel
Strand 3	F	213	216	anti-parallel
Strand 4	F	227	231	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	136	first strand
Strand 2	F	168	172	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	181	first strand
Strand 2	F	198	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XBM