Analysis of interatomic Contacts of Structural Units in PDB entry:
5XBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XBZ entry

There are 2 chains in PDB entry 5XBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	PHE 721
B	GLY 5	ARG 724

There are 57 helices in PDB entry 5XBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	47	52	Right-handed 310
Helix 4	AA4	A	54	58	Right-handed 310
Helix 5	AA5	A	121	123	Right-handed 310
Helix 6	AA6	A	252	254	Right-handed 310
Helix 7	AA7	A	255	262	Right-handed alpha
Helix 8	AA8	A	302	307	Right-handed alpha
Helix 9	AA9	A	310	314	Right-handed 310
Helix 10	AB1	A	357	359	Right-handed 310
Helix 11	AB2	A	360	373	Right-handed alpha
Helix 12	AB3	A	375	381	Right-handed alpha
Helix 13	AB4	A	384	403	Right-handed alpha
Helix 14	AB5	A	404	409	Right-handed alpha
Helix 15	AB6	A	412	432	Right-handed alpha
Helix 16	AB7	A	455	459	Right-handed 310
Helix 17	AB8	A	465	473	Right-handed 310
Helix 18	AB9	A	475	494	Right-handed alpha
Helix 19	AC1	A	498	515	Right-handed alpha
Helix 20	AC2	A	555	573	Right-handed alpha
Helix 21	AC3	A	574	596	Right-handed alpha
Helix 22	AC4	A	606	611	Right-handed alpha
Helix 23	AC5	A	632	639	Right-handed alpha
Helix 24	AC6	A	645	651	Right-handed alpha
Helix 25	AC7	A	654	665	Right-handed alpha
Helix 26	AC8	A	666	673	Right-handed 310
Helix 27	AC9	A	676	686	Right-handed alpha
Helix 28	AD1	A	689	700	Right-handed alpha
Helix 29	AD2	A	707	716	Right-handed alpha
Helix 30	AD3	B	16	20	Right-handed 310
Helix 31	AD4	B	47	52	Right-handed 310
Helix 32	AD5	B	54	58	Right-handed 310
Helix 33	AD6	B	252	254	Right-handed 310
Helix 34	AD7	B	255	263	Right-handed alpha
Helix 35	AD8	B	302	307	Right-handed alpha
Helix 36	AD9	B	310	314	Right-handed 310
Helix 37	AE1	B	357	359	Right-handed 310
Helix 38	AE2	B	360	373	Right-handed alpha
Helix 39	AE3	B	384	403	Right-handed alpha
Helix 40	AE4	B	404	409	Right-handed alpha
Helix 41	AE5	B	412	432	Right-handed alpha
Helix 42	AE6	B	455	459	Right-handed 310
Helix 43	AE7	B	465	473	Right-handed 310
Helix 44	AE8	B	475	494	Right-handed alpha
Helix 45	AE9	B	498	515	Right-handed alpha
Helix 46	AF1	B	554	572	Right-handed alpha
Helix 47	AF2	B	574	596	Right-handed alpha
Helix 48	AF3	B	606	611	Right-handed alpha
Helix 49	AF4	B	632	639	Right-handed alpha
Helix 50	AF5	B	640	642	Right-handed 310
Helix 51	AF6	B	645	651	Right-handed alpha
Helix 52	AF7	B	654	664	Right-handed alpha
Helix 53	AF8	B	665	670	Right-handed alpha
Helix 54	AF9	B	671	673	Right-handed 310
Helix 55	AG1	B	676	686	Right-handed alpha
Helix 56	AG2	B	689	700	Right-handed alpha
Helix 57	AG3	B	707	716	Right-handed alpha

There are 15 sheets in PDB entry 5XBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	282	290	anti-parallel
Strand 4	A	336	341	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	439	442	parallel
Strand 3	A	447	450	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	80	83	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	173	176	anti-parallel
Strand 5	A	234	237	anti-parallel
Strand 6	A	225	231	anti-parallel
Strand 7	A	198	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	106	108	anti-parallel
Strand 3	A	622	624	anti-parallel
Strand 4	A	617	619	anti-parallel
Strand 5	A	551	552	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	135	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	148	158	anti-parallel
Strand 4	A	164	171	anti-parallel
Strand 5	A	241	249	anti-parallel
Strand 6	A	214	219	anti-parallel
Strand 7	A	202	207	anti-parallel
Strand 8	A	181	186	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	328	333	anti-parallel
Strand 3	A	315	322	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	535	536	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	269	276	anti-parallel
Strand 3	B	282	289	anti-parallel
Strand 4	B	336	341	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	439	442	parallel
Strand 3	B	447	450	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	115	119	anti-parallel
Strand 5	B	173	176	anti-parallel
Strand 6	B	234	236	anti-parallel
Strand 7	B	228	231	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	106	108	anti-parallel
Strand 3	B	623	624	anti-parallel
Strand 4	B	617	619	anti-parallel
Strand 5	B	551	552	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	135	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	152	158	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	241	249	anti-parallel
Strand 6	B	214	219	anti-parallel
Strand 7	B	202	206	anti-parallel
Strand 8	B	184	186	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	225	226	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	328	333	anti-parallel
Strand 3	B	315	322	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	535	536	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XBZ