Analysis of interatomic Contacts of Structural Units in PDB entry:
5XC2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XC2 entry

There are 4 chains in PDB entry 5XC2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	ARG 724
B	GLY 5	ARG 724
C	GLY 5	PHE 722
D	GLY 5	PHE 722

There are110 helices in PDB entry 5XC2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	47	52	Right-handed 310
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	121	123	Right-handed 310
Helix 5	AA5	A	252	254	Right-handed 310
Helix 6	AA6	A	255	263	Right-handed alpha
Helix 7	AA7	A	302	307	Right-handed alpha
Helix 8	AA8	A	357	359	Right-handed 310
Helix 9	AA9	A	360	373	Right-handed alpha
Helix 10	AB1	A	375	381	Right-handed alpha
Helix 11	AB2	A	384	403	Right-handed alpha
Helix 12	AB3	A	404	409	Right-handed alpha
Helix 13	AB4	A	412	432	Right-handed alpha
Helix 14	AB5	A	455	459	Right-handed 310
Helix 15	AB6	A	465	473	Right-handed 310
Helix 16	AB7	A	475	494	Right-handed alpha
Helix 17	AB8	A	498	515	Right-handed alpha
Helix 18	AB9	A	555	573	Right-handed alpha
Helix 19	AC1	A	574	596	Right-handed alpha
Helix 20	AC2	A	606	611	Right-handed alpha
Helix 21	AC3	A	632	639	Right-handed alpha
Helix 22	AC4	A	640	642	Right-handed 310
Helix 23	AC5	A	645	651	Right-handed alpha
Helix 24	AC6	A	654	665	Right-handed alpha
Helix 25	AC7	A	669	673	Right-handed 310
Helix 26	AC8	A	676	686	Right-handed alpha
Helix 27	AC9	A	689	698	Right-handed alpha
Helix 28	AD1	A	707	717	Right-handed alpha
Helix 29	AD2	B	16	20	Right-handed 310
Helix 30	AD3	B	47	52	Right-handed 310
Helix 31	AD4	B	54	58	Right-handed 310
Helix 32	AD5	B	121	123	Right-handed 310
Helix 33	AD6	B	252	254	Right-handed 310
Helix 34	AD7	B	255	262	Right-handed alpha
Helix 35	AD8	B	302	307	Right-handed alpha
Helix 36	AD9	B	357	359	Right-handed 310
Helix 37	AE1	B	360	373	Right-handed alpha
Helix 38	AE2	B	375	381	Right-handed alpha
Helix 39	AE3	B	384	403	Right-handed alpha
Helix 40	AE4	B	404	409	Right-handed alpha
Helix 41	AE5	B	412	432	Right-handed alpha
Helix 42	AE6	B	455	459	Right-handed 310
Helix 43	AE7	B	465	473	Right-handed 310
Helix 44	AE8	B	475	494	Right-handed alpha
Helix 45	AE9	B	498	515	Right-handed alpha
Helix 46	AF1	B	555	573	Right-handed alpha
Helix 47	AF2	B	574	596	Right-handed alpha
Helix 48	AF3	B	606	611	Right-handed alpha
Helix 49	AF4	B	632	639	Right-handed alpha
Helix 50	AF5	B	640	642	Right-handed 310
Helix 51	AF6	B	645	651	Right-handed alpha
Helix 52	AF7	B	654	665	Right-handed alpha
Helix 53	AF8	B	676	686	Right-handed alpha
Helix 54	AF9	B	689	700	Right-handed alpha
Helix 55	AG1	B	707	717	Right-handed alpha
Helix 56	AG2	C	16	20	Right-handed 310
Helix 57	AG3	C	47	52	Right-handed 310
Helix 58	AG4	C	54	58	Right-handed 310
Helix 59	AG5	C	121	123	Right-handed 310
Helix 60	AG6	C	252	254	Right-handed 310
Helix 61	AG7	C	255	262	Right-handed alpha
Helix 62	AG8	C	302	307	Right-handed alpha
Helix 63	AG9	C	357	359	Right-handed 310
Helix 64	AH1	C	360	373	Right-handed alpha
Helix 65	AH2	C	375	381	Right-handed alpha
Helix 66	AH3	C	384	403	Right-handed alpha
Helix 67	AH4	C	404	409	Right-handed alpha
Helix 68	AH5	C	412	432	Right-handed alpha
Helix 69	AH6	C	455	459	Right-handed 310
Helix 70	AH7	C	465	473	Right-handed 310
Helix 71	AH8	C	475	494	Right-handed alpha
Helix 72	AH9	C	498	515	Right-handed alpha
Helix 73	AI1	C	555	572	Right-handed alpha
Helix 74	AI2	C	574	596	Right-handed alpha
Helix 75	AI3	C	606	611	Right-handed alpha
Helix 76	AI4	C	632	639	Right-handed alpha
Helix 77	AI5	C	640	642	Right-handed 310
Helix 78	AI6	C	645	651	Right-handed alpha
Helix 79	AI7	C	654	665	Right-handed alpha
Helix 80	AI8	C	669	673	Right-handed 310
Helix 81	AI9	C	676	686	Right-handed alpha
Helix 82	AJ1	C	689	700	Right-handed alpha
Helix 83	AJ2	C	707	717	Right-handed alpha
Helix 84	AJ3	D	16	20	Right-handed 310
Helix 85	AJ4	D	47	52	Right-handed 310
Helix 86	AJ5	D	54	58	Right-handed 310
Helix 87	AJ6	D	252	254	Right-handed 310
Helix 88	AJ7	D	255	262	Right-handed alpha
Helix 89	AJ8	D	302	307	Right-handed alpha
Helix 90	AJ9	D	357	359	Right-handed 310
Helix 91	AK1	D	360	374	Right-handed alpha
Helix 92	AK2	D	375	381	Right-handed alpha
Helix 93	AK3	D	384	403	Right-handed alpha
Helix 94	AK4	D	404	409	Right-handed alpha
Helix 95	AK5	D	412	432	Right-handed alpha
Helix 96	AK6	D	455	459	Right-handed 310
Helix 97	AK7	D	465	473	Right-handed 310
Helix 98	AK8	D	475	494	Right-handed alpha
Helix 99	AK9	D	498	515	Right-handed alpha
Helix 100	AL1	D	555	572	Right-handed alpha
Helix 101	AL2	D	574	596	Right-handed alpha
Helix 102	AL3	D	606	611	Right-handed alpha
Helix 103	AL4	D	632	639	Right-handed alpha
Helix 104	AL5	D	645	651	Right-handed alpha
Helix 105	AL6	D	654	665	Right-handed alpha
Helix 106	AL7	D	669	673	Right-handed 310
Helix 107	AL8	D	676	685	Right-handed alpha
Helix 108	AL9	D	686	688	Right-handed 310
Helix 109	AM1	D	689	700	Right-handed alpha
Helix 110	AM2	D	707	716	Right-handed alpha

There are 28 sheets in PDB entry 5XC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	282	290	anti-parallel
Strand 4	A	336	341	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	439	442	parallel
Strand 3	A	447	450	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	115	119	anti-parallel
Strand 5	A	173	176	anti-parallel
Strand 6	A	234	237	anti-parallel
Strand 7	A	225	229	anti-parallel
Strand 8	A	197	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	106	108	anti-parallel
Strand 3	A	622	624	anti-parallel
Strand 4	A	617	619	anti-parallel
Strand 5	A	551	552	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	148	158	anti-parallel
Strand 4	A	164	171	anti-parallel
Strand 5	A	241	249	anti-parallel
Strand 6	A	214	219	anti-parallel
Strand 7	A	202	207	anti-parallel
Strand 8	A	181	186	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	328	333	anti-parallel
Strand 3	A	315	322	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	535	536	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	267	276	anti-parallel
Strand 3	B	282	290	anti-parallel
Strand 4	B	336	341	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	439	442	parallel
Strand 3	B	447	450	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	115	119	anti-parallel
Strand 5	B	173	176	anti-parallel
Strand 6	B	234	237	anti-parallel
Strand 7	B	225	228	anti-parallel
Strand 8	B	197	200	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	106	108	anti-parallel
Strand 3	B	622	624	anti-parallel
Strand 4	B	617	619	anti-parallel
Strand 5	B	551	552	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	135	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	148	158	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	241	249	anti-parallel
Strand 6	B	214	219	anti-parallel
Strand 7	B	202	207	anti-parallel
Strand 8	B	181	186	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	328	333	anti-parallel
Strand 3	B	315	322	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	535	536	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	267	276	anti-parallel
Strand 3	C	282	290	anti-parallel
Strand 4	C	336	341	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	439	442	parallel
Strand 3	C	447	450	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	67	70	anti-parallel
Strand 3	C	80	83	anti-parallel
Strand 4	C	115	119	anti-parallel
Strand 5	C	173	176	anti-parallel
Strand 6	C	234	237	anti-parallel
Strand 7	C	225	228	anti-parallel
Strand 8	C	198	200	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	106	108	anti-parallel
Strand 3	C	622	624	anti-parallel
Strand 4	C	617	619	anti-parallel
Strand 5	C	551	552	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	134	first strand
Strand 2	C	138	145	anti-parallel
Strand 3	C	148	158	anti-parallel
Strand 4	C	163	171	anti-parallel
Strand 5	C	241	249	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	202	207	anti-parallel
Strand 8	C	181	186	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	328	333	anti-parallel
Strand 3	C	315	322	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	530	first strand
Strand 2	C	535	536	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	267	276	anti-parallel
Strand 3	D	282	290	anti-parallel
Strand 4	D	336	341	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	439	442	parallel
Strand 3	D	447	450	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	67	69	anti-parallel
Strand 3	D	80	83	anti-parallel
Strand 4	D	115	117	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	106	108	anti-parallel
Strand 3	D	622	624	anti-parallel
Strand 4	D	617	619	anti-parallel
Strand 5	D	551	552	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	138	143	anti-parallel
Strand 3	D	152	158	anti-parallel
Strand 4	D	164	171	anti-parallel
Strand 5	D	241	250	anti-parallel
Strand 6	D	214	219	anti-parallel
Strand 7	D	202	205	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	328	333	anti-parallel
Strand 3	D	315	322	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	535	536	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XC2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XC2