Analysis of interatomic Contacts of Structural Units in PDB entry:
5XC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XC6 entry

There are 4 chains in PDB entry 5XC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 168LYS 618
B
 GLY 168LYS 618
C
 A 1 U 6
D
 A 1 U 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5XC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
179 184Right-handed 310
Helix 2
AA2
A
202 214Right-handed alpha
Helix 3
AA3
A
224 236Right-handed alpha
Helix 4
AA4
A
262 271Right-handed alpha
Helix 5
AA5
A
290 306Right-handed alpha
Helix 6
AA6
A
348 354Right-handed alpha
Helix 7
AA7
A
364 376Right-handed alpha
Helix 8
AA8
A
377 379Right-handed 310
Helix 9
AA9
A
389 399Right-handed alpha
Helix 10
AB1
A
450 459Right-handed alpha
Helix 11
AB2
A
486 496Right-handed alpha
Helix 12
AB3
A
509 513Right-handed 310
Helix 13
AB4
A
527 540Right-handed alpha
Helix 14
AB5
A
543 553Right-handed alpha
Helix 15
AB6
A
559 564Right-handed 310
Helix 16
AB7
A
567 571Right-handed 310
Helix 17
AB8
A
597 601Right-handed 310
Helix 18
AB9
A
603 616Right-handed alpha
Helix 19
AC1
B
179 184Right-handed 310
Helix 20
AC2
B
202 214Right-handed alpha
Helix 21
AC3
B
224 236Right-handed alpha
Helix 22
AC4
B
262 271Right-handed alpha
Helix 23
AC5
B
290 306Right-handed alpha
Helix 24
AC6
B
348 354Right-handed alpha
Helix 25
AC7
B
364 377Right-handed alpha
Helix 26
AC8
B
389 394Right-handed alpha
Helix 27
AC9
B
394 399Right-handed alpha
Helix 28
AD1
B
450 459Right-handed alpha
Helix 29
AD2
B
486 496Right-handed alpha
Helix 30
AD3
B
509 513Right-handed 310
Helix 31
AD4
B
526 539Right-handed alpha
Helix 32
AD5
B
543 552Right-handed alpha
Helix 33
AD6
B
559 564Right-handed 310
Helix 34
AD7
B
567 571Right-handed 310
Helix 35
AD8
B
597 601Right-handed 310
Helix 36
AD9
B
603 616Right-handed alpha
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There are 9 sheets in PDB entry 5XC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
310 314parallel
Strand 3
A
280 284parallel
Strand 4
A
218 222parallel
Strand 5
A
257 261parallel
Strand 6
A
241 242parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
470 474parallel
Strand 3
A
421 424parallel
Strand 4
A
358 361parallel
Strand 5
A
404 407parallel
Strand 6
A
382 385parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 434first strand
Strand 2
A
440 448anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
577 578anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
588 590anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
310 314parallel
Strand 3
B
280 284parallel
Strand 4
B
218 222parallel
Strand 5
B
257 261parallel
Strand 6
B
240 242parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 336first strand
Strand 2
B
470 474parallel
Strand 3
B
421 424parallel
Strand 4
B
358 361parallel
Strand 5
B
404 407parallel
Strand 6
B
382 385parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 434first strand
Strand 2
B
440 448anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 582first strand
Strand 2
B
588 590anti-parallel
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