Analysis of interatomic Contacts of Structural Units in PDB entry:
5XCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XCB entry

There is 1 chain in PDB entry 5XCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 29THR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 5XCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 79Right-handed 310
Helix 2
AA2
A
81 85Right-handed 310
Helix 3
AA3
A
88 95Right-handed 310
Helix 4
AA4
A
96 114Right-handed alpha
Helix 5
AA5
A
274 279Right-handed alpha
Helix 6
AA6
A
280 282Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 5XCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
168 170parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
52 63anti-parallel
Strand 3
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
52 63anti-parallel
Strand 3
A
132 138anti-parallel
Strand 4
A
153 157anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
164 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
286 294anti-parallel
Strand 5
A
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
286 294anti-parallel
Strand 5
A
241 244anti-parallel
Strand 6
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
326 336parallel
Strand 3
A
308 317anti-parallel
Strand 4
A
222 228anti-parallel
Strand 5
A
267 273anti-parallel
Strand 6
A
255 261anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il