Analysis of interatomic Contacts of Structural Units in PDB entry:
5XD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XD0 entry

There are 2 chains in PDB entry 5XD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32TYR 409
B
 ALA 32TYR 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5XD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 73Right-handed alpha
Helix 2
AA2
A
94 107Right-handed alpha
Helix 3
AA3
A
113 128Right-handed alpha
Helix 4
AA4
A
154 173Right-handed alpha
Helix 5
AA5
A
179 195Right-handed alpha
Helix 6
AA6
A
219 223Right-handed 310
Helix 7
AA7
A
224 236Right-handed alpha
Helix 8
AA8
A
238 259Right-handed alpha
Helix 9
AA9
A
295 297Right-handed 310
Helix 10
AB1
A
298 311Right-handed alpha
Helix 11
AB2
A
315 330Right-handed alpha
Helix 12
AB3
A
333 337Right-handed 310
Helix 13
AB4
A
353 364Right-handed alpha
Helix 14
AB5
A
365 369Right-handed 310
Helix 15
AB6
A
370 384Right-handed alpha
Helix 16
AB7
A
388 403Right-handed alpha
Helix 17
AB8
B
54 73Right-handed alpha
Helix 18
AB9
B
94 108Right-handed alpha
Helix 19
AC1
B
113 127Right-handed alpha
Helix 20
AC2
B
154 173Right-handed alpha
Helix 21
AC3
B
179 195Right-handed alpha
Helix 22
AC4
B
219 223Right-handed 310
Helix 23
AC5
B
224 236Right-handed alpha
Helix 24
AC6
B
238 259Right-handed alpha
Helix 25
AC7
B
295 297Right-handed 310
Helix 26
AC8
B
298 311Right-handed alpha
Helix 27
AC9
B
315 330Right-handed alpha
Helix 28
AD1
B
333 337Right-handed 310
Helix 29
AD2
B
353 365Right-handed alpha
Helix 30
AD3
B
366 369Right-handed 310
Helix 31
AD4
B
370 384Right-handed alpha
Helix 32
AD5
B
388 403Right-handed alpha
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There are 8 sheets in PDB entry 5XD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
82 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
140 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
202 203anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
275 278anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
82 84anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
140 141anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
202 203anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
275 278anti-parallel
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