Analysis of interatomic Contacts of Structural Units in PDB entry:
5XD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XD6 entry

There are 2 chains in PDB entry 5XD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 46ASN 350
B
 GLN 50ASN 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5XD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 66Right-handed alpha
Helix 2
AA2
A
70 72Right-handed 310
Helix 3
AA3
A
105 118Right-handed alpha
Helix 4
AA4
A
148 155Right-handed alpha
Helix 5
AA5
A
169 190Right-handed alpha
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
209 211Right-handed 310
Helix 8
AA8
A
219 223Right-handed 310
Helix 9
AA9
A
244 250Right-handed alpha
Helix 10
AB1
A
254 272Right-handed alpha
Helix 11
AB2
A
286 292Right-handed alpha
Helix 12
AB3
A
293 295Right-handed 310
Helix 13
AB4
A
299 303Right-handed 310
Helix 14
AB5
A
305 309Right-handed 310
Helix 15
AB6
A
313 328Right-handed alpha
Helix 16
AB7
A
331 335Right-handed 310
Helix 17
AB8
A
337 346Right-handed alpha
Helix 18
AB9
A
347 350Right-handed 310
Helix 19
AC1
B
58 67Right-handed alpha
Helix 20
AC2
B
70 72Right-handed 310
Helix 21
AC3
B
105 118Right-handed alpha
Helix 22
AC4
B
148 155Right-handed alpha
Helix 23
AC5
B
169 190Right-handed alpha
Helix 24
AC6
B
201 203Right-handed 310
Helix 25
AC7
B
209 211Right-handed 310
Helix 26
AC8
B
244 250Right-handed alpha
Helix 27
AC9
B
254 272Right-handed alpha
Helix 28
AD1
B
286 292Right-handed alpha
Helix 29
AD2
B
293 295Right-handed 310
Helix 30
AD3
B
299 303Right-handed 310
Helix 31
AD4
B
305 309Right-handed 310
Helix 32
AD5
B
313 328Right-handed alpha
Helix 33
AD6
B
331 335Right-handed 310
Helix 34
AD7
B
337 346Right-handed alpha
Helix 35
AD8
B
347 350Right-handed 310
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There are 4 sheets in PDB entry 5XD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
127 133anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
212 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
136 142anti-parallel
Strand 5
B
127 133anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
212 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il