Analysis of interatomic Contacts of Structural Units in PDB entry:
5XD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XD9 entry

There is 1 chain in PDB entry 5XD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5XD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
69 74Right-handed alpha
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
99 121Right-handed alpha
Helix 5
AA5
A
123 128Right-handed alpha
Helix 6
AA6
A
147 161Right-handed alpha
Helix 7
AA7
A
174 190Right-handed alpha
Helix 8
AA8
A
204 216Right-handed alpha
Helix 9
AA9
A
217 219Right-handed 310
Helix 10
AB1
A
231 240Right-handed alpha
Helix 11
AB2
A
254 265Right-handed alpha
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
278 293Right-handed alpha
Helix 14
AB5
A
302 314Right-handed alpha
Helix 15
AB6
A
324 329Right-handed 310
Helix 16
AB7
A
353 358Right-handed alpha
Helix 17
AB8
A
359 361Right-handed 310
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There are 3 sheets in PDB entry 5XD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 23first strand
Strand 2
A
27 41anti-parallel
Strand 3
A
46 53anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
246 248parallel
Strand 3
A
223 224parallel
Strand 4
A
194 198parallel
Strand 5
A
165 169parallel
Strand 6
A
134 140parallel
Strand 7
A
317 320parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
246 248parallel
Strand 3
A
223 224parallel
Strand 4
A
194 198parallel
Strand 5
A
165 169parallel
Strand 6
A
134 140parallel
Strand 7
A
339 341anti-parallel
Strand 8
A
334 336anti-parallel
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